Evidence map›Paper›PMID 20581822›Full record

ArticleNature chemical biology2010

Transcriptional regulation by small RNAs at sequences downstream from 3' gene termini.

Xuan Yue, Jacob C Schwartz, Yongjun Chu, Scott T Younger, Keith T Gagnon, Sayda Elbashir, Bethany A Janowski, David R Corey

Abstract read
In one paragraph

Article in Nature chemical biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 110 citations in OpenAlex.

  1. Review
  2. Nuclear Roles of Spliceosome-Associated microRNAs in Neuronal Cancer Cells.International journal of molecular sciences · 2025
    Article
  3. Article
  4. The roles of subcellular Argonaute 2 in cardiovascular diseases.Journal of translational internal medicine · 2025
    Article
  5. Review
  6. Small RNAs, spermatogenesis, and male infertility: a decade of retrospect.Reproductive biology and endocrinology : RB&E · 2023
    Review
  7. Review
  8. RNA activation in ticks.Scientific reports · 2023
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. The reactivation of P53 by saRNA affects the biological behavior in vitro in gastric cancer cells.International journal of clinical and experimental pathology · 2018
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Xuan YueDepartment of Pharmacology, University of Texas Southwestern Medical Center, Dallas, Texas, USA.
Jacob C Schwartz
Yongjun Chu
Scott T Younger
Keith T Gagnon
Sayda Elbashir
Bethany A Janowski
David R Corey
The University of Texas Southwestern Medical Center · USAlnylam Pharmaceuticals (United States) · US

Funding

Recognition of Chromosomal DNA by Double-Stranded RNAR01GM077253 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI COREY, DAVID R · 2007 to 2010
$1.5M
Molecular Switches: Regulatory RNAs Targeting Nuclear Hormone Receptor PromotersR01GM085080 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI JANOWSKI, BETHANY ANN · 2009 to 2013
$1.2M
"Smart" Radiolabels to Image Macromolecular InteractionsF31EB005556 · NIBIB · UT SOUTHWESTERN MEDICAL CENTER · PI SCHWARTZ, JACOB C. · 2006 to 2009
$117k
NIBIB NIH HHS EB 05556NIBIB NIH HHS F31 EB005556NIGMS NIH HHS GM77253NIGMS NIH HHS GM85080NIGMS NIH HHS R01 GM077253NIGMS NIH HHS R01 GM085080
6 · The paper itself

Abstract

Transcriptome studies reveal many noncoding transcripts overlapping 3' gene termini. The function of these transcripts is unknown. Here we have characterized transcription at the progesterone receptor (PR) locus and identified noncoding transcripts that overlap the 3' end of the gene. Small RNAs complementary to sequences beyond the 3' terminus of PR mRNA modulated expression of PR, recruited argonaute 2 to a 3' noncoding transcript, altered occupancy of RNA polymerase II, induced chromatin changes at the PR promoter and affected responses to physiological stimuli. We found that the promoter and 3' terminal regions of the PR locus are in close proximity, providing a potential mechanism for RNA-mediated control of transcription over long genomic distances. These results extend the potential for small RNAs to regulate transcription to target sequences beyond the 3' termini of mRNA.

Indexed as

3' Untranslated Regions5' Untranslated RegionsBRCA1 ProteinCell LineChromatinDNA, ComplementaryGene Expression ProfilingGene Expression RegulationGene TargetingHumansProtein ConformationRNA, MessengerRNA, Small Cytoplasmic3' Untranslated Regions5' Untranslated RegionsBRCA1 ProteinChromatinDNA, ComplementaryRNA, MessengerRNA, Small Cytoplasmic

Identifiers

PMID20581822
PMCPMC3909968
OpenAlexW2036628539

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.