Evidence map›Paper›PMID 20577092›Full record

ArticleJournal of acquired immune deficiency syndromes (1999)2010

Genetic variation of innate immune genes in HIV-infected african patients with or without oropharyngeal candidiasis.

Theo S Plantinga, Omar J M Hamza, Janet A Willment, Bart Ferwerda, Nicole M D van de Geer, Paul E Verweij, Mecky I N Matee, Kathy Banahan, Luke A J O'neill, Bart-Jan Kullberg and 3 more

Open access · greenAbstract read
In one paragraph

Article in Journal of acquired immune deficiency syndromes (1999), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 2 pooled it
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 2 syntheses or guidelines pooled it, 51 citations in OpenAlex.

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  9. Medical mycology and fungal immunology: new research perspectives addressing a major world health challenge.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2016
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  19. Immunity to fungal infections.Nature reviews. Immunology · 2011
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 4 countries.

Theo S PlantingaDepartment of Medicine, Radboud University Nijmegen Medical Centre, Nijmegen, The Netherlands.
Omar J M Hamza
Janet A Willment
Bart Ferwerda
Nicole M D van de Geer
Paul E Verweij
Mecky I N Matee
Kathy Banahan
Luke A J O'neill
Bart-Jan Kullberg
Gordon D Brown
André J A M van der Ven
Mihai G Netea
Radboud University Nijmegen · NLMuhimbili University of Health and Allied Sciences · TZTrinity College Dublin · IEUniversity of Cape Town · ZARadboud University Medical Center · NL

Funding

Wellcome Trust 086558
6 · The paper itself

Abstract

backgroundThe occurrence of oropharyngeal candidiasis (OPC) in combination with HIV disease progression is a very common phenomenon. However, not all HIV-infected patients develop OPC, even when they progress to low CD4 T-cell counts. Because T-cell immunity is defective in AIDS, the innate defence mechanisms are likely to have a central role in antifungal immunity in these patients. We investigated whether genetic variations in the innate immune genes DECTIN-1, TLR2, TLR4, TIRAP, and CASPASE-12 are associated with the presence of OPC in HIV-infected subjects from East Africa.

methodsA total of 225 HIV patients were genotyped for several single nucleotide polymorphisms (SNPs), and this was correlated with the occurrence of OPC in these patients. In addition, primary immune cells obtained from individuals with different genotypes were stimulated with Candida albicans, and cytokine production was measured.

resultsThe analysis revealed that no significant differences in the polymorphism frequencies could be observed, although a tendency toward a protective effect on OPC of the DECTIN-1 I223S SNP was apparent. Furthermore, interferon gamma production capacity was markedly lower in cells bearing the DECTIN-1 SNP I223S. It could also be demonstrated that the 223S mutated form of the DECTIN-1 gene exhibits a lower capacity to bind zymosan.

conclusionsThese data demonstrate that common polymorphisms of TLR2, TLR4, TIRAP, and CASPASE-12 do not influence susceptibility to OPC in HIV-infected patients in East Africa but suggest an immunomodulatory effect of the I223S SNP on dectin-1 function and possibly the susceptibility to OPC in HIV patients.

Indexed as

Genetic VariationAfricaCandida albicansCandidiasis, OralCytokinesGenes, FungalHIV InfectionsHumansImmunity, InnateLeukocytes, MononuclearCytokines

Identifiers

PMID20577092
PMCPMC3443739
OpenAlexW2065626589

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.