Evidence map›Paper›PMID 20577008›Full record

ArticleJournal of medical genetics2010

Transcobalamin II receptor polymorphisms are associated with increased risk for neural tube defects.

F Pangilinan, A Mitchell, J VanderMeer, A M Molloy, J Troendle, M Conley, P N Kirke, M Sutton, J M Sequeira, E V Quadros and 3 more

Erratum issuedAbstract read
In one paragraph

Article in Journal of medical genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 20 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 1 synthesis or guideline pooled it, 46 citations in OpenAlex.

  1. Pooled it
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  4. Review
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  6. Transcellular transport of cobalamin in aortic endothelial cells.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2018
    Article
  7. Should vitamin BAnnals of the New York Academy of Sciences · 2018
    Review
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

13 authors at 6 institutions in 2 countries.

F PangilinanMolecular Pathogenesis Section, Genome Technology Branch, National Human Genome Research Institute, 50 South Drive, Bethesda, MD 20892-8004, USA.
A Mitchell
J VanderMeer
A M Molloy
J Troendle
M Conley
P N Kirke
M Sutton
J M Sequeira
E V Quadros
J M Scott
J L Mills
L C Brody
National Human Genome Research Institute · USHealth Research Board · IENational Institutes of Health · USState University of New York · USTrinity College Dublin · IEEunice Kennedy Shriver National Institute of Child Health and Human Development · US

Funding

The contribution folate and vitamin B12 genes to disease.ZIAHG000167 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BRODY, LAWRENCE C · 2009 to 2025
$17.6M
The genetics of folate and vitamin B12 metabolism relateZ01HG000167 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI BRODY, LAWRENCE C · 2000 to 2008
$4.0M
NICHD Health Research Board Of Ireland Neural Tube Defects StudyZIAHD002502 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI MILLS, JAMES · 2009 to 2022
$2.9M
The Transcobalamin Receptor in Cobalamin HomeostasisR01DK064732 · NIDDK · SUNY DOWNSTATE MEDICAL CENTER · PI QUADROS, EDWARD V · 2005 to 2010
$1.4M
The transcobalamin receptor in cobalamin homeostasisR56DK064732 · NIDDK · SUNY DOWNSTATE MEDICAL CENTER · PI QUADROS, EDWARD V · 2011 to 2011
$92k
Intramural NIH HHS Z01 HG000167Intramural NIH HHS Z99 HG999999Intramural NIH HHS Z99 HL999999Intramural NIH HHS ZIA HD002502NIDDK NIH HHS DK064732NIDDK NIH HHS R01 DK064732NIDDK NIH HHS R56 DK064732
6 · The paper itself

Abstract

objectiveWomen who have low cobalamin (vitamin B(12)) levels are at increased risk for having children with neural tube defects (NTDs). The transcobalamin II receptor (TCblR) mediates uptake of cobalamin into cells. Inherited variants in the TCblR gene as NTD risk factors were evaluated.

methodsCase-control and family-based tests of association were used to screen common variation in TCblR as genetic risk factors for NTDs in a large Irish group. A confirmatory group of NTD triads was used to test positive findings.

results2 tightly linked variants associated with NTDs in a recessive model were found: TCblR rs2336573 (G220R; p(corr)=0.0080, corrected for multiple hypothesis testing) and TCblR rs9426 (p(corr)=0.0279). These variants were also associated with NTDs in a family-based test before multiple test correction (log-linear analysis of a recessive model: rs2336573 (G220R; RR=6.59, p=0.0037) and rs9426 (RR=6.71, p=0.0035)). A copy number variant distal to TCblR and two previously unreported exonic insertion-deletion polymorphisms were described.

conclusionsTCblR rs2336573 (G220R) and TCblR rs9426 represent a significant risk factor in NTD cases in the Irish population. The homozygous risk genotype was not detected in nearly 1000 controls, indicating that this NTD risk factor may be of low frequency and high penetrance. 9 other variants are in perfect linkage disequilibrium with the associated single nucleotide polymorphisms. Additional work is required to identify the disease-causing variant. Our data suggest that variation in TCblR plays a role in NTD risk and that these variants may modulate cobalamin metabolism.

Indexed as

Genetic Predisposition to DiseasePolymorphism, GeneticAllelesCase-Control StudiesCohort StudiesFamilyFemaleGene FrequencyGenotypeHumansIrelandMaleNeural Tube DefectsReceptors, Cell SurfaceRisk FactorsTranscobalaminsReceptors, Cell Surfacetranscobalamin receptorTranscobalamins

Identifiers

PMID20577008
PMCPMC4112773
OpenAlexW2108833607

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.