Evidence map›Paper›PMID 20573812›Full record

ArticleJournal of virology2010

In vitro assembly of the T=13 procapsid of bacteriophage T5 with its scaffolding domain.

Alexis Huet, James F Conway, Lucienne Letellier, Pascale Boulanger

Abstract read
In one paragraph

Article in Journal of virology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Temperature-induced DNA density transition in phage λ capsid revealed with contrast-matching SANS.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. Article
  6. Structure ofViruses · 2023
    Article
  7. Siphophage 0105phi7-2 ofInternational journal of molecular sciences · 2023
    Article
  8. Capsid Structure ofJournal of virology · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Solid-to-fluid-like DNA transition in viruses facilitates infection.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  15. Article
  16. Review
  17. Article
  18. Crystallization of the C-terminal domain of the bacteriophage T5 L-shaped fibre.Acta crystallographica. Section F, Structural biology and crystallization communications · 2013
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Alexis HuetInstitut de Biochimie et de Biophysique Moléculaire et Cellulaire, Univ Paris-Sud, UMR CNRS 8619, F-91405 Orsay, France.
James F Conway
Lucienne Letellier
Pascale Boulanger

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Siphoviridae coliphage T5 differs from other members of this family by the size of its genome (121 kbp) and by its large icosahedral capsid (90 nm), which is organized with T=13 geometry. T5 does not encode a separate scaffolding protein, but its head protein, pb8, contains a 159-residue aminoterminal scaffolding domain (Delta domain) that is the mature capsid. We have deciphered the early events of T5 shell assembly starting from purified pb8 with its Delta domain (pb8p). The self assembly of pb8p is regulated by salt conditions and leads to structures with distinct morphologies. Expanded tubes are formed in the presence of NaCl, whereas Ca(2+) promotes the association of pb8p into contracted tubes and procapsids. Procapsids display an angular organization and 20-nm-long internal radial structures identified as the Delta domain. The T5 head maturation protease pb11 specifically cleaves the Delta domain of contracted and expanded tubes. Ca(2+) is not required for proteolytic activity but for the organization of the Delta domain. Taken together, these data indicate that pb8p carries all of the information in its primary sequence to assemble in vitro without the requirement of the portal and accessory proteins. Furthermore, Ca(2+) plays a key role in introducing the conformational diversity that permits the formation of a stable procapsid. Phage T5 is the first example of a viral capsid consisting of quasi-equivalent hexamers and pentamers whose assembly can be carried out in vitro, starting from the major head protein with its scaffolding domain, and whose endpoint is an icosahedral T=13 particle.

Indexed as

Virus AssemblyCalciumCapsidCapsid ProteinsCations, DivalentProtein BindingProtein MultimerizationSiphoviridaeSodium ChlorideCalciumCapsid ProteinsCations, DivalentSodium Chloride

Identifiers

PMID20573812
PMCPMC2937613

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.