Evidence map›Paper›PMID 20573696›Full record

ArticleDevelopment (Cambridge, England)2010

hand2 and Dlx genes specify dorsal, intermediate and ventral domains within zebrafish pharyngeal arches.

Jared Coffin Talbot, Stephen L Johnson, Charles B Kimmel

Open access · greenAbstract read
In one paragraph

Article in Development (Cambridge, England), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 105 papers.

0numbers the graph read from it
0cells of the map it votes in
105citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

105 citing papers in PubMed, 159 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
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  7. Article
  8. Article
  9. Assessing candidate DLX-regulated genes in the first pharyngeal arch of chick embryos.Developmental dynamics : an official publication of the American Association of Anatomists · 2025
    Article
  10. Article
  11. A potential role of Fgf3 for epibranchial formation in zebrafish.Frontiers in cell and developmental biology · 2025
    Article
  12. Structure and function of the larval teleost fish gill.Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology · 2024
    Review
  13. Review
  14. Article
  15. Endothelin signaling in development.Development (Cambridge, England) · 2023
    Review
  16. Craniofacial developmental biology in the single-cell era.Development (Cambridge, England) · 2023
    Review
  17. Loss ofBiomolecules · 2023
    Article
  18. Article
  19. Article
  20. Review

45 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Jared Coffin TalbotInstitute of Neuroscience, University of Oregon, Eugene, OR 97403, USA. jtalbot@uoregon.edu
Stephen L Johnson
Charles B Kimmel
University of Oregon · USWashington University in St. Louis · US

Funding

Zebrafish FacilityP01HD022486 · NICHD · UNIVERSITY OF OREGON · PI EISEN, JUDITH S · 1987 to 2017
$28.8M
CRANIOFACIAL MORPHOGENESIS IN ZEBRAFISHR01DE013834 · NIDCR · UNIVERSITY OF OREGON · PI KIMMEL, CHARLES B · 2000 to 2014
$6.9M
DEVELOPMENTAL BIOLOGY TRAINING PROGRAMT32HD007348 · NICHD · UNIVERSITY OF OREGON · PI Chris Q Doe, KRYN STANKUNAS · 1989 to 2026
$6.8M
REGULATION OF ADULT STEM CELLS IN ZEBRAFISHR01GM056988 · NIGMS · WASHINGTON UNIVERSITY · PI JOHNSON, STEPHEN L · 1998 to 2016
$6.0M
SYSTEMS PHYSIOLOGY TRAINING PROGRAMT32GM007257 · NIGMS · UNIVERSITY OF OREGON · PI LOCKERY, SHAWN R · 1985 to 2009
$1.6M
Identification of GFP gene traps in zebrafishR01DK069466 · NIDDK · WASHINGTON UNIVERSITY · PI JOHNSON, STEPHEN L · 2005 to 2009
$1.5M
NICHD NIH HHS HD22486NICHD NIH HHS P01 HD022486NICHD NIH HHS T32 HD007348NIDCR NIH HHS DE13834NIDCR NIH HHS R01 DE013834NIDDK NIH HHS DK069466NIDDK NIH HHS R01 DK069466NIGMS NIH HHS GM007257NIGMS NIH HHS R01 GM056988NIGMS NIH HHS T32 GM007257
6 · The paper itself

Abstract

The ventrally expressed secreted polypeptide endothelin1 (Edn1) patterns the skeleton derived from the first two pharyngeal arches into dorsal, intermediate and ventral domains. Edn1 activates expression of many genes, including hand2 and Dlx genes. We wanted to know how hand2/Dlx genes might generate distinct domain identities. Here, we show that differential expression of hand2 and Dlx genes delineates domain boundaries before and during cartilage morphogenesis. Knockdown of the broadly expressed genes dlx1a and dlx2a results in both dorsal and intermediate defects, whereas knockdown of three intermediate-domain restricted genes dlx3b, dlx4b and dlx5a results in intermediate-domain-specific defects. The ventrally expressed gene hand2 patterns ventral identity, in part by repressing dlx3b/4b/5a. The jaw joint is an intermediate-domain structure that expresses nkx3.2 and a more general joint marker, trps1. The jaw joint expression of trps1 and nkx3.2 requires dlx3b/4b/5a function, and expands in hand2 mutants. Both hand2 and dlx3b/4b/5a repress dorsal patterning markers. Collectively, our work indicates that the expression and function of hand2 and Dlx genes specify major patterning domains along the dorsoventral axis of zebrafish pharyngeal arches.

Indexed as

Gene Expression RegulationGene Expression Regulation, DevelopmentalAnimalsBasic Helix-Loop-Helix ProteinsBody PatterningBone and BonesBranchial RegionHomeodomain ProteinsMutationProtein Structure, TertiaryTranscription FactorsZebrafishZebrafish ProteinsBasic Helix-Loop-Helix ProteinsDistal-less homeobox proteinsdlx3b protein, zebrafishdlx5a protein, zebrafishhand2 protein, zebrafishHomeodomain ProteinsTranscription FactorsZebrafish Proteins

Identifiers

PMID20573696
PMCPMC2927700
OpenAlexW2084341282

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.