ArticleBMC genomics2010
A draft physical map of a D-genome cotton species (Gossypium raimondii).
Article in BMC genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
28 citing papers in PubMed.
- Comprehensive genomic identification of cotton starch synthase genes reveals thatFrontiers in plant science · 2023Article
- ThePlant physiology · 2020Article
- Genome-Wide Survey and Comparative Analysis of Long Terminal Repeat (LTR) Retrotransposon Families in Four Gossypium Species.Scientific reports · 2018Article
- Activation of ABA Receptors GeneFrontiers in plant science · 2017Article
- Progress in genome sequencing will accelerate molecular breeding in cotton (Gossypium spp.).3 Biotech · 2016Review
- Genome-wide identification of auxin response factor (ARF) genes and its tissue-specific prominent expression in Gossypium raimondii.Functional & integrative genomics · 2015Article
- Deep sequencing reveals important roles of microRNAs in response to drought and salinity stress in cotton.Journal of experimental botany · 2015Article
- Construction of BAC contig maps of homoeologous chromosomes A12 and D12 of Gossypium hirsutum L. acc. TM-1.Molecular cytogenetics · 2015Article
- A sequence-ready physical map of barley anchored genetically by two million single-nucleotide polymorphisms.Plant physiology · 2014Article
- Molecular markers and cotton genetic improvement: current status and future prospects.TheScientificWorldJournal · 2014Review
- Article
- Whole genome profiling physical map and ancestral annotation of tobacco Hicks Broadleaf.The Plant journal : for cell and molecular biology · 2013Article
- Construction of a plant-transformation-competent BIBAC library and genome sequence analysis of polyploid Upland cotton (Gossypium hirsutum L.).BMC genomics · 2013Article
- Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.Nature · 2012Article
- Toward allotetraploid cotton genome assembly: integration of a high-density molecular genetic linkage map with DNA sequence information.BMC genomics · 2012Article
- The draft genome of a diploid cotton Gossypium raimondii.Nature genetics · 2012Article
- MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity.Nucleic acids research · 2012Article
- cDNA-AFLP-based genetical genomics in cotton fibers.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome.BMC genomics · 2012Article
- Genome physical mapping of polyploids: a BIBAC physical map of cultivated tetraploid cotton, Gossypium hirsutum L.PloS one · 2012Article
Corrections and comments
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Authors and funding
32 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundGenetically anchored physical maps of large eukaryotic genomes have proven useful both for their intrinsic merit and as an adjunct to genome sequencing. Cultivated tetraploid cottons, Gossypium hirsutum and G. barbadense, share a common ancestor formed by a merger of the A and D genomes about 1-2 million years ago. Toward the long-term goal of characterizing the spectrum of diversity among cotton genomes, the worldwide cotton community has prioritized the D genome progenitor Gossypium raimondii for complete sequencing.
resultsA whole genome physical map of G. raimondii, the putative D genome ancestral species of tetraploid cottons was assembled, integrating genetically-anchored overgo hybridization probes, agarose based fingerprints and 'high information content fingerprinting' (HICF). A total of 13,662 BAC-end sequences and 2,828 DNA probes were used in genetically anchoring 1585 contigs to a cotton consensus genetic map, and 370 and 438 contigs, respectively to Arabidopsis thaliana (AT) and Vitis vinifera (VV) whole genome sequences.
conclusionSeveral lines of evidence suggest that the G. raimondii genome is comprised of two qualitatively different components. Much of the gene rich component is aligned to the Arabidopsis and Vitis vinifera genomes and shows promise for utilizing translational genomic approaches in understanding this important genome and its resident genes. The integrated genetic-physical map is of value both in assembling and validating a planned reference sequence.
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