Evidence map›Paper›PMID 20566716›Full record

ArticleThe Journal of experimental medicine2010

ATM-deficient thymic lymphoma is associated with aberrant tcrd rearrangement and gene amplification.

Shan Zha, Craig H Bassing, Takaomi Sanda, James W Brush, Harin Patel, Peter H Goff, Michael M Murphy, Suprawee Tepsuporn, Richard A Gatti, A Thomas Look and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 80 citations in OpenAlex.

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  11. AnThe Journal of biological chemistry · 2020
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  14. Nbn-Mre11 interaction is required for tumor suppression and genomic integrity.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  15. Article
  16. Cutting Edge: ATM Influences Germinal Center Integrity.Journal of immunology (Baltimore, Md. : 1950) · 2019
    Article
  17. Review
  18. Article
  19. Ataxia telangiectasia: a review.Orphanet journal of rare diseases · 2016
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Shan ZhaHoward Hughes Medical Institute, Children's Hospital, Immune Disease Institute, and Harvard Medical School, Boston, MA 02115, USA. sz2296@columbia.edu
Craig H Bassing
Takaomi Sanda
James W Brush
Harin Patel
Peter H Goff
Michael M Murphy
Suprawee Tepsuporn
Richard A Gatti
A Thomas Look
Frederick W Alt
Harvard University · USHoward Hughes Medical Institute · USDana-Farber Cancer Institute · USUniversity of California, Los Angeles · US

Funding

The Molecular Function of D-cyclins in T-ALLP01CA109901 · NCI · DANA-FARBER CANCER INSTITUTE · PI YOUNG, RICHARD · 2004 to 2014
$19.6M
Mechanisms that Control IgH Variable Region Exon AssemblyR01AI020047 · NIAID · IMMUNE DISEASE INSTITUTE, INC. · PI ALT, FREDERICK W. · 1985 to 2025
$14.1M
Molecular Pathways in Suppression and Development of T Lineage LymphomasR01CA125195 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI BASSING, CRAIG H · 2007 to 2011
$1.6M
Howard Hughes Medical InstituteNCI NIH HHS CA109901NCI NIH HHS P01 CA109901NCI NIH HHS R01 CA125195NIAID NIH HHS R01 AI020047
6 · The paper itself

Abstract

Ataxia telangiectasia mutated (ATM) deficiency predisposes humans and mice to T lineage lymphomas with recurrent chromosome 14 translocations involving the T cell receptor alpha/delta (Tcra/d) locus. Such translocations have been thought to result from aberrant repair of DNA double-strand breaks (DSBs) during Tcra locus V(D)J recombination, and to require the Tcra enhancer (Ealpha) for Tcra rearrangement or expression of the translocated oncogene. We now show that, in addition to the known chromosome 14 translocation, ATM-deficient mouse thymic lymphomas routinely contain a centromeric fragment of chromosome 14 that spans up to the 5' boundary of the Tcra/d locus, at which position a 500-kb or larger region centromeric to Tcra/d is routinely amplified. In addition, they routinely contain a large deletion of the telomeric end of one copy of chromosome 12. In contrast to prior expectations, the recurrent translocations and amplifications involve V(D)J recombination-initiated breaks in the Tcrd locus, as opposed to the Tcra locus, and arise independently of the Ealpha. Overall, our studies reveal previously unexpected mechanisms that contribute to the oncogenic transformation of ATM-deficient T lineage cells.

Indexed as

AnimalsAtaxia Telangiectasia Mutated ProteinsBase SequenceCell Cycle ProteinsChromosomes, MammalianClone CellsCytogenetic AnalysisDNA-Binding ProteinsEnhancer Elements, GeneticGene AmplificationGene Rearrangement, delta-Chain T-Cell Antigen ReceptorGenetic LociLymphomaMiceMolecular Sequence DataProtein Serine-Threonine KinasesAtaxia Telangiectasia Mutated ProteinsATM protein, humanAtm protein, mouseCell Cycle ProteinsDNA-Binding ProteinsProtein Serine-Threonine KinasesReceptors, Antigen, T-Cell, gamma-deltaTumor Suppressor Proteins

Identifiers

PMID20566716
PMCPMC2901073
OpenAlexW2135812215

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.