ArticleMolecular biology and evolution2010
Tracing the evolution of the floral homeotic B- and C-function genes through genome synteny.
Article in Molecular biology and evolution, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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19 citing papers in PubMed, 46 citations in OpenAlex.
- Genomics insights into flowering and floral pattern formation: regional duplication and seasonal pattern of gene expression in Camellia.BMC biology · 2024Article
- Metabolic analysis of the regulatory mechanism of sugars on secondary flowering in Magnolia.BMC molecular and cell biology · 2022Article
- Tracing the Evolution of thePlants (Basel, Switzerland) · 2022Article
- Molecular Evolution of theGenes · 2019Article
- Functional analysis of the TM6 MADS-box gene in the octoploid strawberry by CRISPR/Cas9-directed mutagenesis.Journal of experimental botany · 2019Article
- Characterization of genes and alleles involved in the control of flowering time in grapevine.PloS one · 2019Article
- Genome-wide survey of potato MADS-box genes reveals that StMADS1 and StMADS13 are putative downstream targets of tuberigen StSP6A.BMC genomics · 2018Article
- Conservation of Nonsense-Mediated mRNA Decay Complex Components Throughout Eukaryotic Evolution.Scientific reports · 2017Article
- Phylogenomic Synteny Network Analysis of MADS-Box Transcription Factor Genes Reveals Lineage-Specific Transpositions, Ancient Tandem Duplications, and Deep Positional Conservation.The Plant cell · 2017Article
- ERAMOSA controls lateral branching in snapdragon.Scientific reports · 2017Article
- Evolution of Gene Duplication in Plants.Plant physiology · 2016Review
- Expression of B-class MADS-box genes in response to variations in photoperiod is associated with chasmogamous and cleistogamous flower development in Viola philippica.BMC plant biology · 2016Article
- Duplicate MADS genes with split roles.Journal of experimental botany · 2016Article
- Phylogenetic analyses provide the first insights into the evolution of OVATE family proteins in land plants.Annals of botany · 2014Article
- Functional and evolutionary analysis of the AP1/SEP/AGL6 superclade of MADS-box genes in the basal eudicot Epimedium sagittatum.Annals of botany · 2014Article
- PGDD: a database of gene and genome duplication in plants.Nucleic acids research · 2013Article
- Combining phylogenetic and syntenic analyses for understanding the evolution of TCP ECE genes in eudicots.PloS one · 2013Article
- MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity.Nucleic acids research · 2012Article
- Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades.BMC genomics · 2012Article
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Authors and funding
5 authors at 3 institutions in 3 countries.
Funding
Abstract
The evolution of the floral homeotic genes has been characterized using phylogenetic and functional studies. It is possible to enhance these studies by comparing gene content and order between species to determine the evolutionary history of the regulatory genes. Here, we use a synteny-based approach to trace the evolution of the floral B- and C-function genes that are required for specification of the reproductive organs. Consistent with previous phylogenetic studies, we show that the euAP3-TM6 split occurred after the monocots and dicots diverged. The Arabidopsis TM6 and papaya euAP3 genes are absent from the respective genomes, and we have detected loci from which these genes were lost. These data indicate that either the TM6 or the euAP3 lineage genes can be lost without detriment to flower development. In contrast, PI is essential for male reproductive organ development; yet, contrary to predictions, complex genomic rearrangements have resulted in almost complete breakdown of synteny at the PI locus. In addition to showing the evolution of B-function genes through the prediction of ancestral loci, similar reconstructions reveal the origins of the C-function AG and PLE lineages in dicots, and show the shared ancestry with the monocot C-function genes. During our studies, we found that transposable elements (TEs) present in sequenced Antirrhinum genomic clones limited comparative studies. A pilot survey of the Antirrhinum data revealed that gene-rich regions contain an unusually high degree of TEs of very varied types, which will be an important consideration for future genome sequencing efforts.
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