ArticleBMC plant biology2010
Genome-wide characterization of the biggest grass, bamboo, based on 10,608 putative full-length cDNA sequences.
Article in BMC plant biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
39 citing papers in PubMed, 116 citations in OpenAlex.
- Single-nucleus and spatial transcriptomics reveal the cell populations of intercalary meristems in bamboo.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- Molecular Identification and Functional Characterization of a Putrescine Hydroxycinnamoyltransferase in Suspension Cells of Bamboo (Phyllostachys nigra).Applied biochemistry and biotechnology · 2025Article
- Physiology and Transcriptome Analysis of Exogenous GACurrent issues in molecular biology · 2025Article
- Development and Future Prospects of Bamboo Gene Science.International journal of molecular sciences · 2025Review
- The Transcriptome Analysis Provides New Insights into Signaling for Bamboo Shoot Development of Sympodial Bamboo.Foods (Basel, Switzerland) · 2025Article
- Rapid growth of Moso bamboo (Phyllostachys edulis): Cellular roadmaps, transcriptome dynamics, and environmental factors.The Plant cell · 2022Article
- Integrative lncRNA landscape reveals lncRNA-coding gene networks in the secondary cell wall biosynthesis pathway of moso bamboo (Phyllostachys edulis).BMC genomics · 2021Article
- Comparative chloroplast genomes: insights into the evolution of the chloroplast genome of Camellia sinensis and the phylogeny of Camellia.BMC genomics · 2021Article
- Chromosome-level reference genome and alternative splicing atlas of moso bamboo (Phyllostachys edulis).GigaScience · 2018Article
- The association of hormone signalling genes, transcription and changes in shoot anatomy during moso bamboo growth.Plant biotechnology journal · 2018Article
- TCP Transcription Factors in Moso Bamboo (Frontiers in plant science · 2018Article
- Characterization and expression analysis of the WRKY gene family in moso bamboo.Scientific reports · 2017Article
- Genome-wide analysis of VQ motif-containing proteins in Moso bamboo (Phyllostachys edulis).Planta · 2017Article
- Genome-wide identification and expression analysis of SBP-like transcription factor genes in Moso Bamboo (Phyllostachys edulis).BMC genomics · 2017Article
- Genome-Wide analysis of the AAAP gene family in moso bamboo (Phyllostachys edulis).BMC plant biology · 2017Article
- Comprehensive analysis of multi-tissue transcriptome data and the genome-wide investigation of GRAS family in Phyllostachys edulis.Scientific reports · 2016Article
- Genome-wide identification and characterization of aquaporin gene family in moso bamboo (Phyllostachys edulis).Molecular biology reports · 2016Article
- Transcriptome and comparative gene expression analysis of Phyllostachys edulis in response to high light.BMC plant biology · 2016Article
- Transcriptome Sequencing and Analysis for Culm Elongation of the World's Largest Bamboo (Dendrocalamus sinicus).PloS one · 2016Article
- Predominance of a single clone of the most widely distributed bamboo species Phyllostachys edulis in East Asia.Journal of plant research · 2016Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
15 authors at 6 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundWith the availability of rice and sorghum genome sequences and ongoing efforts to sequence genomes of other cereal and energy crops, the grass family (Poaceae) has become a model system for comparative genomics and for better understanding gene and genome evolution that underlies phenotypic and ecological divergence of plants. While the genomic resources have accumulated rapidly for almost all major lineages of grasses, bamboo remains the only large subfamily of Poaceae with little genomic information available in databases, which seriously hampers our ability to take a full advantage of the wealth of grass genomic data for effective comparative studies.
resultsHere we report the cloning and sequencing of 10,608 putative full length cDNAs (FL-cDNAs) primarily from Moso bamboo, Phyllostachys heterocycla cv. pubescens, a large woody bamboo with the highest ecological and economic values of all bamboos. This represents the third largest FL-cDNA collection to date of all plant species, and provides the first insight into the gene and genome structures of bamboos. We developed a Moso bamboo genomic resource database that so far contained the sequences of 10,608 putative FL-cDNAs and nearly 38,000 expressed sequence tags (ESTs) generated in this study.
conclusionAnalysis of FL-cDNA sequences show that bamboo diverged from its close relatives such as rice, wheat, and barley through an adaptive radiation. A comparative analysis of the lignin biosynthesis pathway between bamboo and rice suggested that genes encoding caffeoyl-CoA O-methyltransferase may serve as targets for genetic manipulation of lignin content to reduce pollutants generated from bamboo pulping.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.