Evidence map›Paper›PMID 20565708›Full record

ArticleBMC plant biology2010

Chromosomal loci important for cotyledon opening under UV-B in Arabidopsis thaliana.

Mariana Conte, Silvia de Simone, Susan J Simmons, Carlos L Ballaré, Ann E Stapleton

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. STO and GA negatively regulate UV-B-inducedPlant signaling & behavior · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Mariana ConteInstituto de Investigaciones Fisiológicas y Ecológicas Vinculadas a Agricultura, Consejo Nacional de Investigaciones Científicas y Técnicas and Universidad de Buenos Aires, C1417 DSE Buenos Aires, Argentina.
Silvia de Simone
Susan J Simmons
Carlos L Ballaré
Ann E Stapleton
University of Buenos Aires · ARUniversity of North Carolina Wilmington · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundUnderstanding of the genetic architecture of plant UV-B responses allows extensive targeted testing of candidate genes or regions, along with combinations of those genes, for placement in metabolic or signal transduction pathways.

resultsComposite interval mapping and single-marker analysis methods were used to identify significant loci for cotyledon opening under UV-B in four sets of recombinant inbred lines. In addition, loci important for canalization (stability) of cotyledon opening were detected in two mapping populations. One candidate locus contained the gene HY5. Mutant analysis demonstrated that HY5 was required for UV-B-specific cotyledon opening.

conclusionsStructured mapping populations provide key information on the degree of complexity in the genetic control of UV-B-induced cotyledon opening in Arabidopsis. The loci identified using quantitative trait analysis methods are useful for follow-up testing of candidate genes.

Indexed as

Quantitative Trait LociUltraviolet RaysArabidopsisArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsChromosome MappingChromosomes, PlantCotyledonEpistasis, GeneticGenetic MarkersNuclear ProteinsArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsGenetic MarkersHY5 protein, ArabidopsisNuclear Proteins

Identifiers

PMID20565708
PMCPMC3095277
OpenAlexW2006457593

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.