Evidence map›Paper›PMID 20562857›Full record

ArticleNature structural & molecular biology2010

RNA-mediated displacement of an inhibitory snRNP complex activates transcription elongation.

Iván D'Orso, Alan D Frankel

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed, 128 citations in OpenAlex.

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  19. CDK9 keeps RNA polymerase II on track.Cellular and molecular life sciences : CMLS · 2021
    Review
  20. Review

34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Iván D'OrsoDepartment of Biochemistry and Biophysics, University of California, San Francisco, California, USA.
Alan D Frankel
University of California, San Francisco · US

Funding

X-ray Screening and Rapid Structure DeterminationP50GM082250 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FRANKEL, ALAN D · 2007 to 2018
$48.8M
ACTIVITY AND INHIBITION OF THE TAT PROTEIN FROM HIVR01AI029135 · NIAID · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI FRANKEL, ALAN D · 1989 to 2010
$2.8M
NIAID NIH HHS AI29135NIAID NIH HHS R01 AI029135NIGMS NIH HHS P50 GM082250PHS HHS K99/R00 A112185
6 · The paper itself

Abstract

The transition from transcription initiation to elongation at the HIV-1 promoter is controlled by Tat, which recruits P-TEFb to TAR RNA to phosphorylate RNA polymerase II. It has long been unclear why the HIV-1 promoter is incompetent for elongation. We report that P-TEFb is recruited to the promoter in a catalytically inactive state bound to the inhibitory 7SK small nuclear ribonucleoprotein (snRNP), thereby preventing elongation. It also has long been believed that TAR functions to recruit Tat to the promoter, but we find that Tat is recruited to the DNA template before TAR is synthesized. We propose that TAR binds Tat and P-TEFb as it emerges on the nascent transcript, competitively displacing the inhibitory 7SK snRNP and activating the P-TEFb kinase. Recruitment of an inhibitory snRNP complex at an early stage in the transcription cycle provides a new paradigm for controlling gene expression with a noncoding RNA.

Indexed as

Promoter Regions, GeneticTranscriptional ActivationDNA Polymerase IIGene Expression Regulation, ViralHeLa CellsHIV-1HumansPositive Transcriptional Elongation Factor BRegulatory Sequences, Ribonucleic AcidRibonucleoproteins, Small NuclearRNA, Viraltat Gene Products, Human Immunodeficiency VirusViral ProteinsDNA Polymerase IIPositive Transcriptional Elongation Factor BRegulatory Sequences, Ribonucleic AcidRibonucleoproteins, Small NuclearRNA, Viraltat Gene Products, Human Immunodeficiency VirusViral Proteins

Identifiers

PMID20562857
PMCPMC2921552
OpenAlexW2171873711

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.