Evidence map›Paper›PMID 20562308›Full record

ArticleJournal of bacteriology2010

The LysR-type virulence activator AphB regulates the expression of genes in Vibrio cholerae in response to low pH and anaerobiosis.

Gabriela Kovacikova, Wei Lin, Karen Skorupski

Abstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 77 papers.

0numbers the graph read from it
0cells of the map it votes in
77citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

77 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
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  5. An In Vitro System Mimics the Intestinal Microbiota of Striped Beakfish (Animals : an open access journal from MDPI · 2024
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  6. Non-O1/Non-O139Microorganisms · 2024
    Review
  7. L-Ascorbic Acid RestrictsMicroorganisms · 2024
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Review
  13. Structural Insights into Regulation of Vibrio Virulence Gene Networks.Advances in experimental medicine and biology · 2023
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Expression of the AHPND Toxins PirAInternational journal of molecular sciences · 2022
    Article
  19. Article
  20. Article

17 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Gabriela KovacikovaDepartment of Microbiology and Immunology, Dartmouth Medical School, Hanover, NH 03755, USA.
Wei Lin
Karen Skorupski

Funding

New Mechanisms for Regulating Virulence Gene ExpressionR01AI041558 · NIAID · DARTMOUTH COLLEGE · PI SKORUPSKI, KAREN A · 2002 to 2011
$3.1M
NEW MECHANISMS FOR REGULATING VIRULENCE GENE EXPRESSIONR29AI041558 · NIAID · DARTMOUTH COLLEGE · PI SKORUPSKI, KAREN A · 1997 to 2001
$240k
NIAID NIH HHS AI41558NIAID NIH HHS R01 AI041558NIAID NIH HHS R29 AI041558
6 · The paper itself

Abstract

AphB is a LysR-type activator that initiates the expression of the virulence cascade in Vibrio cholerae by cooperating with the quorum-sensing-regulated activator AphA at the tcpPH promoter on the Vibrio pathogenicity island (VPI). To identify the ancestral chromosomal genes in V. cholerae regulated by AphB, we carried out a microarray analysis and show here that AphB influences the expression of a number of genes that are not associated with the VPI. One gene strongly activated by AphB is cadC, which encodes the ToxR-like transcriptional activator responsible for activating the expression of lysine decarboxylase, which plays an important role in survival at low pH. Other genes activated by AphB encode a Na(+)/H(+) antiporter, a carbonic anhydrase, a member of the ClC family of chloride channels, and a member of the Gpr1/Fun34/YaaH family. AphB influences each of these genes directly by recognizing a conserved binding site within their promoters, as determined by gel mobility shift assays. Transcriptional lacZ fusions indicate that AphB activates the expression of these genes under aerobic conditions in response to low pH and also under anaerobic conditions at neutral pH. Further experiments show that the regulation of cadC by AphB in response to low pH and anaerobiosis is mirrored in the heterologous organism Escherichia coli, is independent of the global regulators Fnr and ArcAB, and depends upon the region of the promoter that contains the AphB binding site. These results raise the possibility that the activity of AphB is influenced by the pH and oxygen tension of the environment.

Indexed as

Gene Expression Regulation, BacterialStress, PhysiologicalAnaerobiosisArtificial Gene FusionBacterial Proteinsbeta-GalactosidaseBinding SitesConserved SequenceDNA, BacterialElectrophoretic Mobility Shift AssayGene DeletionGene Expression ProfilingGenes, BacterialGenes, ReporterHydrogen-Ion ConcentrationOligonucleotide Array Sequence AnalysisAphB protein, Vibrio choleraeBacterial Proteinsbeta-GalactosidaseDNA, BacterialTrans-Activators

Identifiers

PMID20562308
PMCPMC2916415

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.