Evidence map›Paper›PMID 20562275›Full record

ArticleApplied and environmental microbiology2010

Novel high-throughput detection method to assess bacterial surfactant production.

Adrien Y Burch, Briana K Shimada, Patrick J Browne, Steven E Lindow

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 109 citations in OpenAlex.

  1. Article
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  3. Article
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  8. Article
  9. Screening Strategies for Biosurfactant Discovery.Advances in biochemical engineering/biotechnology · 2022
    Article
  10. Article
  11. Article
  12. The RsmA RNA-Binding Proteins inFrontiers in plant science · 2021
    Article
  13. Review
  14. Emerging priorities for microbial metagenome research.Bioresource technology reports · 2020
    Review
  15. Article
  16. Article
  17. Article
  18. Quorum Sensing Controls Both Rhamnolipid and Polyhydroxyalkanoate Production inFrontiers in bioengineering and biotechnology · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Adrien Y BurchDepartment of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, California 94720-3102, USA.
Briana K Shimada
Patrick J Browne
Steven E Lindow
University of California, Berkeley · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A novel biosurfactant detection assay was developed for the observation of surfactants on agar plates. By using an airbrush to apply a fine mist of oil droplets, surfactants can be observed instantaneously as halos around biosurfactant-producing colonies. This atomized oil assay can detect a wide range of different synthetic and bacterially produced surfactants. This method could detect much lower concentrations of many surfactants than a commonly used water drop collapse method. It is semiquantitative and therefore has broad applicability for uses such as high-throughput mutagenesis screens of biosurfactant-producing bacterial strains. The atomized oil assay was used to screen for mutants of the plant pathogen Pseudomonas syringae pv. syringae B728a that were altered in the production of biosurfactants. Transposon mutants displaying significantly altered surfactant halos were identified and further analyzed. All mutants identified displayed altered swarming motility, as would be expected of surfactant mutants. Additionally, measurements of the transcription of the syringafactin biosynthetic cluster in the mutants, the principal biosurfactant known to be produced by B728a, revealed novel regulators of this pathway.

Indexed as

DNA Transposable ElementsGene Expression ProfilingGenes, BacterialHigh-Throughput Screening AssaysLocomotionMultigene FamilyMutagenesis, InsertionalOilsPseudomonas syringaeSurface-Active AgentsTranscription, GeneticDNA Transposable ElementsOilsSurface-Active Agents

Identifiers

PMID20562275
PMCPMC2918974
OpenAlexW2108922863

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.