Evidence map›Paper›PMID 20554826›Full record

ArticleJournal of clinical microbiology2010

Evaluation of colorimetric methods using nicotinamide for rapid detection of pyrazinamide resistance in Mycobacterium tuberculosis.

Niuris C Mirabal, Sergio L Yzquierdo, Dihadenys Lemus, Mariela Madruga, Yoslaine Milián, Miguel Echemendía, Howard Takiff, Anandi Martin, Patrick Van der Stuyf, Juan Carlos Palomino and 1 more

Open access · greenAbstract readComparative StudyEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Mutations inAntimicrobial agents and chemotherapy · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Niuris C MirabalLaboratorio Nacional de Referencia en Tuberculosis y Mycobacteria, PAHO/WHO Collaborating Centre, Instituto de Medicina Tropical Pedro Kouri (IPK), La Habana, Cuba.
Sergio L Yzquierdo
Dihadenys Lemus
Mariela Madruga
Yoslaine Milián
Miguel Echemendía
Howard Takiff
Anandi Martin
Patrick Van der Stuyf
Juan Carlos Palomino
Ernesto Montoro
Instituto de Medicina Tropical “Pedro Kourí” · CUInstituut voor Tropische Geneeskunde · BEInstituto Venezolano de Investigaciones Científicas · VE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The direct detection of pyrazinamide resistance in Mycobacterium tuberculosis is sufficiently difficult that many laboratories do not attempt it. Most pyrazinamide resistance is caused by mutations that inactivate the pyrazinamidase enzyme needed to convert the prodrug pyrazinamide to its active form. We evaluated two newer and simpler methods to assess pyrazinamidase activity, the nitrate reductase and malachite green microtube assays, using nicotinamide in place of pyrazinamide. A total of 102 strains were tested by these methods and the results compared with those obtained by the classic Wayne assay. Mutations in the pncA gene were identified by sequencing the pncA genes from all isolates in which pyrazinamide resistance was detected by any of the three methods. Both the nitrate reductase and malachite green microtube assays showed sensitivities of 93.75% and specificities of 97.67%. Mutations in the pncA gene were found in 14 of 16 strains that were pyrazinamide resistant and in 1 of 4 strains that were sensitive by the Wayne assay. Both of these simple methods, used with nicotinamide, are promising and inexpensive alternatives for the rapid detection of pyrazinamide resistance in limited-resource countries.

Indexed as

Drug Resistance, BacterialAmidohydrolasesAntitubercular AgentsColorimetryHumansMicrobial Sensitivity TestsMycobacterium tuberculosisNiacinamideNitratesOrganometallic CompoundsPyrazinamideSensitivity and SpecificitySequence Analysis, DNAAmidohydrolasesAntitubercular AgentsmalachiteNiacinamideNitratesOrganometallic CompoundsPncA protein, Mycobacterium tuberculosisPyrazinamide

Identifiers

PMID20554826
PMCPMC2916567
OpenAlexW1972783452

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.