Evidence map›Paper›PMID 20554816›Full record

ArticleJournal of clinical microbiology2010

Epidemiological and phylogenetic analysis of Spanish human Brucella melitensis strains by multiple-locus variable-number tandem-repeat typing, hypervariable octameric oligonucleotide fingerprinting, and rpoB typing.

Sylvia Valdezate, Ana Navarro, Pilar Villalón, Gema Carrasco, Juan A Saéz-Nieto

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

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0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Genetic Characterization ofFrontiers in microbiology · 2021
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4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

5 authors.

Sylvia ValdezateServicio de Bacteriología Centro Nacional de Microbiología, Instituto de Salud Carlos III, Majadahonda, Madrid, Spain. svaldezate@isciii.es
Ana Navarro
Pilar Villalón
Gema Carrasco
Juan A Saéz-Nieto

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The severe morbidity of human brucellosis is one of the main reasons for using molecular typing in the epidemiological surveillance of this worldwide zoonosis. Multiple-locus variable-number repeat analysis (MLVA-16), hypervariable octameric oligonucleotide fingerprinting (HOOF-print), and the differences in the single nucleotide polymorphisms (SNPs) (codons 1249 and 1309) of the DNA-dependent RNA polymerase beta subunit (rpoB) were used to type a human Brucella melitensis population (108 strains) collected from throughout Spain over 13 years. Eighty-six MLVA types (discriminatory index, 0.99) were detected, with a wide-ranging genetic similarity coefficient (37.2 to 93.7%). The population clustered into the following groups: American, with genotypes 47 (1 strain), 48 (13 strains), 53 (12 strains), 55 (2 strains), 80 (1 strain), and a new genotype (2 strains), Western Mediterranean, with genotype 51 (9 strains), and Eastern Mediterranean, with genotypes 42 (60 strains), 43 (4 strains), and 63 (4 strains). Two profession-related and two foodborne acquisitions were confirmed. Distributed throughout Spain, Eastern Mediterranean genotype 42 was the most common (55%). The low MLVA-16 allelic polymorphism (genetic similarity range, 75 to 94%) of the genotype 42 strains suggests that they recently evolved from a common ancestor. rpoB typing grouped the strains as rpoB type 1 (1249-ATG/1309-CTG; 28.7%), rpoB type 2 (1249-ATG/1309-CTA; 62.9%), and rpoB type 3 (1249-ATA/1309-CTG; 8.3%). According to the MLVA-16 results, the population clustered by rpoB type. Given the correlation between B. melitensis MLVA groups and rpoB types (American and rpoB type 1, Eastern Mediterranean and rpoB type 2, and Western Mediterranean and rpoB type 3), the rpoB type could be used as an initial marker for the epidemiological surveillance of brucellosis.

Indexed as

Bacterial Typing TechniquesDNA FingerprintingBacterial ProteinsBrucella melitensisBrucellosisCluster AnalysisDNA, BacterialDNA-Directed RNA PolymerasesGenotypeHumansMinisatellite RepeatsMolecular EpidemiologyOligonucleotidesPolymorphism, GeneticSpainBacterial ProteinsDNA, BacterialDNA-Directed RNA PolymerasesOligonucleotidesRNA polymerase beta subunit

Identifiers

PMID20554816
PMCPMC2916618

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.