Evidence map›Paper›PMID 20553390›Full record

ArticleMolecular microbiology2010

Polyphosphate binds to the principal sigma factor of RNA polymerase during starvation response in Helicobacter pylori.

Zhao Xu Yang, Yan Ning Zhou, Yi Yang, Ding Jun Jin

Open access · hybridAbstract read
In one paragraph

Article in Molecular microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. The Protein Scaffolding Functions of Polyphosphate.Journal of molecular biology · 2024
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Transformation ofPathogens (Basel, Switzerland) · 2020
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Growth rate regulation in Escherichia coli.FEMS microbiology reviews · 2012
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Zhao Xu YangNational Cancer Institute, National Institutes of Health, Frederick, MD, USA.
Yan Ning Zhou
Yi Yang
Ding Jun Jin
National Cancer Institute · USNational Institutes of Health · US

Funding

Transcription Regulation in E. coli and H. pyloriZIABC010632 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI JIN, DING JUN · 2009 to 2019
$11.9M
Intramural NIH HHS ZIA BC010632
6 · The paper itself

Abstract

Helicobacter pylori persists deep in the human gastric mucus layer in a harsh, nutrient-poor environment. Survival under these conditions depends on the ability of this human pathogen to invoke starvation/stress responses when needed. Unlike many bacteria, H. pylori lacks starvation/stress-responding alternative sigma factors, suggesting an additional mechanism might have evolved in this bacterium. Helicobacter pylori produces polyphosphate; however, the role and target of polyphosphate during starvation/stress have not been identified. Here we show that polyphosphate accumulated during nutrient starvation directly targets transcriptional machinery by binding to the principal sigma factor in H. pylori, uncovering a novel mechanism in microbial stress response. A positively charged Lys-rich region at the N-terminal domain of the major sigma factor is identified as the binding region for polyphosphate (region P) in vivo and in vitro, revealing a new element in sigma 70 family proteins. This interaction is biologically significant because mutant strains defective in the interaction undergo premature cell death during starvation. We suggested that polyphosphate is a second messenger employed by H. pylori to mediate gene expression during starvation/stress. The putative 'region P' is present in sigma factors of other human pathogens, suggesting that the uncovered interaction might be a general strategy employed by other pathogens.

Indexed as

Amino Acid SequenceBacterial ProteinsDNA-Directed RNA PolymerasesGene Expression Regulation, BacterialHelicobacter pyloriMolecular Sequence DataPolyphosphatesProtein BindingProtein Structure, TertiarySigma FactorBacterial ProteinsDNA-Directed RNA PolymerasesPolyphosphatesRNA polymerase sigma 70Sigma Factor

Identifiers

PMID20553390
PMCPMC2917625
OpenAlexW2162675837

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.