Evidence map›Paper›PMID 20552021›Full record

ArticlePloS one2010

Haptoglobin and sickle cell polymorphisms and risk of active trachoma in Gambian children.

Mathilde Savy, Branwen J Hennig, Conor P Doherty, Anthony J Fulford, Robin Bailey, Martin J Holland, Giorgio Sirugo, Kirk A Rockett, Dominic P Kwiatkowski, Andrew M Prentice and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Mathilde SavyMRC International Nutrition Group, London School of Hygiene & Tropical Medicine, London, UK.
Branwen J Hennig
Conor P Doherty
Anthony J Fulford
Robin Bailey
Martin J Holland
Giorgio Sirugo
Kirk A Rockett
Dominic P Kwiatkowski
Andrew M Prentice
Sharon E Cox
London School of Hygiene & Tropical Medicine · GBMRC Unit the Gambia · GMCentre for Human Genetics · GB

Funding

Medical Research Council G19/9Medical Research Council MC_U123292699Medical Research Council MC_U123292700
6 · The paper itself

Abstract

backgroundSusceptibility and resistance to trachoma, the leading infectious cause of blindness, have been associated with a range of host genetic factors. In vitro studies of the causative organism, Chlamydia trachomatis, demonstrate that iron availability regulates its growth, suggesting that host genes involved in regulating iron status and/or availability may modulate the risk of trachoma. The objective was to investigate whether haptoglobin (Hp) haplotypes constructed from the functional polymorphism (Hp1/Hp2) plus the functional promoter SNPs -61A-C (rs5471) and -101C-G (rs5470), or sickle cell trait (HbAS, rs334) were associated with risk of active trachoma when stratified by age and sex, in rural Gambian children. METHODOLOGY AND PRINCIPAL

findingsIn two cross sectional surveys of children aged 6-78 months (n = 836), the prevalence of the clinical signs of active trachoma was 21.4%. Within boys, haplotype E (-101G, -61A, Hp1), containing the variant allele of the -101C-G promoter SNP, was associated with a two-fold increased risk of active trachoma (OR = 2.0 [1.17-3.44]). Within girls, an opposite association was non-significant (OR = 0.58 [0.32-1.04]; P = 0.07) and the interaction by sex was statistically significant (P = 0.001). There was no association between trachoma and HbAS.

conclusionsThese data indicate that genetic variation in Hp may affect susceptibility to active trachoma differentially by sex in The Gambia.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideAnemia, Sickle CellBase SequenceChildChild, PreschoolCross-Sectional StudiesDNA PrimersFemaleHaplotypesHaptoglobinsHumansInfantMalePolymerase Chain ReactionRisk FactorsDNA PrimersHaptoglobins

Identifiers

PMID20552021
PMCPMC2884021
OpenAlexW2171925627

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.