Evidence map›Paper›PMID 20551991›Full record

ArticleEuropean journal of human genetics : EJHG2010

Co-expression of FBN1 with mesenchyme-specific genes in mouse cell lines: implications for phenotypic variability in Marfan syndrome.

Kim M Summers, Sobia Raza, Erik van Nimwegen, Thomas C Freeman, David A Hume

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Kim M SummersThe Roslin Institute, University of Edinburgh, Midlothian, UK. kim.summers@roslin.ed.ac.uk
Sobia Raza
Erik van Nimwegen
Thomas C Freeman
David A Hume
Roslin Institute · GBUniversity of Basel · CHUniversity of Edinburgh · GB

Funding

Biotechnology and Biological Sciences Research Council BB/I001107/1
6 · The paper itself

Abstract

Mutations in the human FBN1 gene cause Marfan syndrome, a complex disease affecting connective tissues but with a highly variable phenotype. To identify genes that might participate in epistatic interactions with FBN1, and could therefore explain the observed phenotypic variability, we have looked for genes that are co-expressed with Fbn1 in the mouse. Microarray expression data derived from a range of primary mouse cells and cell lines were analysed using the network analysis tool BioLayout Express(3D). A cluster of 205 genes, including Fbn1, were selectively expressed by mouse cell lines of different mesenchymal lineages and by mouse primary mesenchymal cells (preadipocytes, myoblasts, fibroblasts, osteoblasts). Promoter analysis of this gene set identified several candidate transcriptional regulators. Genes within this co-expressed cluster are candidate genetic modifiers for Marfan syndrome and for other connective tissue diseases.

Indexed as

Gene Expression ProfilingAdipocytesAdipokinesAnimalsCell LineCell Line, TumorCells, CulturedCluster AnalysisFibrillin-1FibrillinsFibroblastsGene Regulatory NetworksHumansMarfan SyndromeMesodermMiceAdipokinesFBN1 protein, humanFbn1 protein, mouseFibrillin-1FibrillinsMicrofilament ProteinsTranscription Factors

Identifiers

PMID20551991
PMCPMC2987476
OpenAlexW1995306890

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.