ArticleGenetics2010
Natural diversity in flowering responses of Arabidopsis thaliana caused by variation in a tandem gene array.
Article in Genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
21 citing papers in PubMed, 1 synthesis or guideline pooled it, 48 citations in OpenAlex.
- QTL meta-analysis in Arabidopsis reveals an interaction between leaf senescence and resource allocation to seeds.Journal of experimental botany · 2014Pooled it
- Prediction of plant complex traits via integration of multi-omics data.Nature communications · 2024Article
- Evolutionary Dynamics ofPlants (Basel, Switzerland) · 2023Article
- Structural variation of GL1 gene determines the trichome formation in Brassica juncea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Article
- Transposition and duplication of MADS-domain transcription factor genes in annual and perennialProceedings of the National Academy of Sciences of the United States of America · 2021Article
- Article
- Temperature-Dependent Alternative Splicing of Precursor mRNAs and Its Biological Significance: A Review Focused on Post-Transcriptional Regulation of a Cold Shock Protein Gene in Hibernating Mammals.International journal of molecular sciences · 2020Review
- Enhanced Maps of Transcription Factor Binding Sites Improve Regulatory Networks Learned from Accessible Chromatin Data.Plant physiology · 2019Article
- Extreme copy number variation at a tRNA ligase gene affecting phenology and fitness in yellow monkeyflowers.Molecular ecology · 2019Article
- Genome-Wide Association Mapping and Genomic Prediction Elucidate the Genetic Architecture of Morphological Traits in Arabidopsis.Plant physiology · 2016Article
- Genetic architecture of variation in heading date among Asian rice accessions.BMC plant biology · 2015Article
- MAF2 Is Regulated by Temperature-Dependent Splicing and Represses Flowering at Low Temperatures in Parallel with FLM.PloS one · 2015Article
- Gene regulatory variation mediates flowering responses to vernalization along an altitudinal gradient in Arabidopsis.Plant physiology · 2014Article
- Genetic mapping of adaptation reveals fitness tradeoffs in Arabidopsis thaliana.Proceedings of the National Academy of Sciences of the United States of America · 2013Article
- Acceleration of flowering in Arabidopsis thaliana by Cape Verde Islands alleles of FLOWERING H is dependent on the floral promoter FD.Journal of experimental botany · 2013Article
- The flowering repressor SVP underlies a novel Arabidopsis thaliana QTL interacting with the genetic background.PLoS genetics · 2013Article
- Functional analysis of splice variant expression of MADS AFFECTING FLOWERING 2 of Arabidopsis thaliana.Plant molecular biology · 2013Article
- Divergence of flowering genes in soybean.Journal of biosciences · 2012Review
- Natural variation in Arabidopsis: from molecular genetics to ecological genomics.Plant physiology · 2012Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors at 2 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Tandemly arrayed genes that belong to gene families characterize genomes of many organisms. Gene duplication and subsequent relaxation of selection can lead to the establishment of paralogous cluster members that may evolve along different trajectories. Here, we report on the structural variation in MADS AFFECTING FLOWERING 2 (MAF2) gene, one member of the tandemly duplicated cluster of MADS-box-containing transcription factors in Arabidopsis thaliana. The altered gene structure at the MAF2 locus is present as a moderate-frequency polymorphism in Arabidopsis and leads to the extensive diversity in transcript patterns due to alternative splicing. Rearrangements at the MAF2 locus are associated with an early flowering phenotype in BC(5) lines. The lack of suppression of flowering time in a MAF2-insertion line expressing the MAF2-specific artificial miRNA suggests that these MAF2 variants are behaving as loss-of-function alleles. The variation in gene architecture is also associated with segregation distortion, which may have facilitated the spread and the establishment of the corresponding alleles throughout the Eurasian range of the A. thaliana population.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.