Evidence map›Paper›PMID 20551438›Full record

ArticleGenetics2010

Y not a dead end: epistatic interactions between Y-linked regulatory polymorphisms and genetic background affect global gene expression in Drosophila melanogaster.

Pan-Pan Jiang, Daniel L Hartl, Bernardo Lemos

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed, 1 pooled it
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed, 1 synthesis or guideline pooled it, 68 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. On the resolution of sexual conflict over shared traits.Proceedings. Biological sciences · 2024
    Review
  4. Article
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  9. Review
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  14. Article
  15. Mitochondrial-Y chromosome epistasis inProceedings. Biological sciences · 2020
    Article
  16. Article
  17. DoesFrontiers in neuroscience · 2019
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Pan-Pan JiangDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138, USA. pjiang@oeb.harvard.edu
Daniel L Hartl
Bernardo Lemos
Harvard University · US

Funding

Novel genomic effects of Y-linked polymorphismsR01GM084236 · NIGMS · HARVARD UNIVERSITY · PI HARTL, DANIEL L · 2009 to 2012
$1.2M
NIGMS NIH HHS GM084236NIGMS NIH HHS R01 GM084236
6 · The paper itself

Abstract

The Y chromosome, inherited without meiotic recombination from father to son, carries relatively few genes in most species. This is consistent with predictions from evolutionary theory that nonrecombining chromosomes lack variation and degenerate rapidly. However, recent work has suggested a dynamic role for the Y chromosome in gene regulation, a finding with important implications for spermatogenesis and male fitness. We studied Y chromosomes from two populations of Drosophila melanogaster that had previously been shown to have major effects on the thermal tolerance of spermatogenesis. We show that these Y chromosomes differentially modify the expression of hundreds of autosomal and X-linked genes. Genes showing Y-linked regulatory variation (YRV) also show an association with immune response and pheromone detection. Indeed, genes located proximal to the euchromatin-heterochromatin boundary of the X chromosome appear particularly responsive to Y-linked variation, including a substantial number of odorant-binding genes. Furthermore, the data show significant regulatory interactions between the Y chromosome and the genetic background of autosomes and X chromosome. Altogether, our findings support the view that interpopulation, Y-linked regulatory polymorphisms can differentially modulate the expression of many genes important to male fitness, and they also point to complex interactions between the Y chromosome and genetic background affecting global gene expression.

Indexed as

Gene Expression ProfilingAnimalsDrosophila melanogasterEpistasis, GeneticFemaleGene OrderGenomicsInbreedingMaleMultigene FamilyPolymorphism, GeneticTropical ClimateX ChromosomeY Chromosome

Identifiers

PMID20551438
PMCPMC2940279
OpenAlexW2144561973

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.