Evidence map›Paper›PMID 20550922›Full record

ArticleBiophysical journal2010

Fast and forceful refolding of stretched alpha-helical solenoid proteins.

Minkyu Kim, Khadar Abdi, Gwangrog Lee, Mahir Rabbi, Whasil Lee, Ming Yang, Christopher J Schofield, Vann Bennett, Piotr E Marszalek

Abstract read
In one paragraph

Article in Biophysical journal, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
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  8. Article
  9. Chaperones rescue luciferase folding by separating its domains.The Journal of biological chemistry · 2014
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Mechanical unfolding studies of protein molecules.Biophysics (Nagoya-shi, Japan) · 2012
    Review
  17. Nanomechanics of streptavidin hubs for molecular materials.Advanced materials (Deerfield Beach, Fla.) · 2011
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Minkyu KimDepartment of Mechanical Engineering and Materials Science, Center for Biologically Inspired Materials and Material Systems, Duke University, Durham, North Carolina, USA.
Khadar Abdi
Gwangrog Lee
Mahir Rabbi
Whasil Lee
Ming Yang
Christopher J Schofield
Vann Bennett
Piotr E Marszalek

Funding

Nanomechanics of Spiral ProteinsR01GM079563 · NIGMS · DUKE UNIVERSITY · PI MARSZALEK, PIOTR E · 2008 to 2011
$1.3M
Howard Hughes Medical InstituteNIGMS NIH HHS GM079563NIGMS NIH HHS R01 GM079563
6 · The paper itself

Abstract

Anfinsen's thermodynamic hypothesis implies that proteins can encode for stretching through reversible loss of structure. However, large in vitro extensions of proteins that occur through a progressive unfolding of their domains typically dissipate a significant amount of energy, and therefore are not thermodynamically reversible. Some coiled-coil proteins have been found to stretch nearly reversibly, although their extension is typically limited to 2.5 times their folded length. Here, we report investigations on the mechanical properties of individual molecules of ankyrin-R, beta-catenin, and clathrin, which are representative examples of over 800 predicted human proteins composed of tightly packed alpha-helical repeats (termed ANK, ARM, or HEAT repeats, respectively) that form spiral-shaped protein domains. Using atomic force spectroscopy, we find that these polypeptides possess unprecedented stretch ratios on the order of 10-15, exceeding that of other proteins studied so far, and their extension and relaxation occurs with minimal energy dissipation. Their sequence-encoded elasticity is governed by stepwise unfolding of small repeats, which upon relaxation of the stretching force rapidly and forcefully refold, minimizing the hysteresis between the stretching and relaxing parts of the cycle. Thus, we identify a new class of proteins that behave as highly reversible nanosprings that have the potential to function as mechanosensors in cells and as building blocks in springy nanostructures. Our physical view of the protein component of cells as being comprised of predominantly inextensible structural elements under tension may need revision to incorporate springs.

Indexed as

Protein FoldingProtein RenaturationBiomechanical PhenomenaHumansKineticsMicroscopy, Atomic ForceModels, MolecularPeptidesProtein DenaturationProteinsProtein Structure, SecondaryThermodynamicsPeptidesProteins

Identifiers

PMID20550922
PMCPMC2884255

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.