Evidence map›Paper›PMID 20547756›Full record

ArticleMolecular and cellular biology2010

Analysis of CUGBP1 targets identifies GU-repeat sequences that mediate rapid mRNA decay.

Bernd Rattenbacher, Daniel Beisang, Darin L Wiesner, Jonathan C Jeschke, Maximilian von Hohenberg, Irina A St Louis-Vlasova, Paul R Bohjanen

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed, 117 citations in OpenAlex.

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23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Bernd RattenbacherCenter for Infectious Diseases and Microbiology Translational Research, Department of Microbiology, University of Minnesota, Minneapolis, MN 55455, USA.
Daniel Beisang
Darin L Wiesner
Jonathan C Jeschke
Maximilian von Hohenberg
Irina A St Louis-Vlasova
Paul R Bohjanen
University of Minnesota · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM008244 · NIGMS · UNIVERSITY OF MINNESOTA TWIN CITIES · PI SHIMIZU, YOJI · 1988 to 2024
$13.6M
Novel Regulators of T Cell mRNA DecayR01AI072068 · NIAID · UNIVERSITY OF MINNESOTA · PI BOHJANEN, PAUL R · 2008 to 2011
$1.3M
RNA-BP in Regulation of T Lymphocyte ActivationR01AI049494 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI BOHJANEN, PAUL R · 2000 to 2004
$1.3M
Regulation of T Lymphocyte mRNA DegradationK02AI052170 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI BOHJANEN, PAUL R · 2002 to 2006
$539k
mRNA Decay in T Lymphocyte ActivationR56AI057484 · NIAID · UNIVERSITY OF MINNESOTA · PI BOHJANEN, PAUL R · 2006 to 2006
$324k
NIAID NIH HHS K02 AI052170NIAID NIH HHS R01 AI049494NIAID NIH HHS R01 AI072068NIAID NIH HHS R56 AI057484NIGMS NIH HHS 5 T32 GM008244NIGMS NIH HHS T32 GM008244PHS HHS AIO57484PHS HHS AIO72068
6 · The paper itself

Abstract

CUG-repeat binding protein 1 (CUGBP1) mediates selective mRNA decay by binding to GU-rich elements (GREs) containing the sequence UGUUUGUUUGU found in the 3' untranslated region (UTR) of short-lived transcripts. We used an anti-CUGBP1 antibody to immunoprecipitate CUGBP1 from HeLa cytoplasmic extracts and analyzed the associated transcripts using oligonucleotide microarrays. We identified 613 putative mRNA targets of CUGBP1 and found that the UGUUUGUUUGU GRE sequence and a GU-repeat sequence were both highly enriched in the 3' UTRs of these targets. We showed that CUGBP1 bound specifically to the GU-repeat sequence and that insertion of this sequence into the 3' UTR of a beta-globin reporter transcript conferred instability to the transcript. Based on these results, we redefined the GRE to include this GU-repeat sequence. Our results suggest that CUGBP1 coordinately regulates the mRNA decay of a network of transcripts involved in cell growth, cell motility, and apoptosis.

Indexed as

3' Untranslated RegionsApoptosisBase SequenceBinding SitesCELF1 ProteinConsensus SequenceDinucleoside PhosphatesDinucleotide RepeatsGene Knockdown TechniquesGene Regulatory NetworksHeLa CellsHumansImmunoprecipitationMolecular Sequence DataProtein BindingRNA-Binding Proteins3' Untranslated RegionsCELF1 ProteinCELF1 protein, humanDinucleoside Phosphatesguanylyl-(3'-5')-uridineRNA-Binding ProteinsRNA, MessengerRNA, Small Interfering

Identifiers

PMID20547756
PMCPMC2916446
OpenAlexW2153696328

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.