Evidence map›Paper›PMID 20547486›Full record

ArticleThe Journal of biological chemistry2010

Three-dimensional structure of the NLRP7 pyrin domain: insight into pyrin-pyrin-mediated effector domain signaling in innate immunity.

Anderson S Pinheiro, Martina Proell, Clarissa Eibl, Rebecca Page, Robert Schwarzenbacher, Wolfgang Peti

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed.

  1. Article
  2. Pattern Recognition by NOD-Like Receptors.Advances in experimental medicine and biology · 2025
    Review
  3. Review
  4. Article
  5. Article
  6. Structure, Activation and Regulation of NLRP3 and AIM2 Inflammasomes.International journal of molecular sciences · 2021
    Review
  7. ATP-Binding and Hydrolysis in Inflammasome Activation.Molecules (Basel, Switzerland) · 2020
    Review
  8. Article
  9. Molecular mechanism for NLRP6 inflammasome assembly and activation.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  10. Article
  11. Article
  12. NLRP7 contributes to in vitro decidualization of endometrial stromal cells.Reproductive biology and endocrinology : RB&E · 2017
    Article
  13. Assembly and regulation of ASC specks.Cellular and molecular life sciences : CMLS · 2017
    Review
  14. Review
  15. Article
  16. Review
  17. Review
  18. Review
  19. An updated view on the structure and function of PYRIN domains.Apoptosis : an international journal on programmed cell death · 2015
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Anderson S PinheiroDepartments of Molecular Pharmacology, Physiology, and Biotechnology, Brown University, Providence, Rhode Island 02912, Austria.
Martina ProellDepartment of Molecular Biology, University of Salzburg, A-5020 Salzburg, Austria.
Clarissa EiblDepartment of Molecular Biology, University of Salzburg, A-5020 Salzburg, Austria.
Rebecca PageMolecular Biology, Cell Biology, and Biochemistry, Brown University, Providence, Rhode Island 02912, Austria.
Robert SchwarzenbacherDepartment of Molecular Biology, University of Salzburg, A-5020 Salzburg, Austria.
Wolfgang PetiDepartments of Molecular Pharmacology, Physiology, and Biotechnology, Brown University, Providence, Rhode Island 02912, Austria. Electronic address: wolfgang_peti@brown.edu.

Funding

An 800 MHz NMR spectrometer for the Boston areaS10RR017269 · NCRR · BRANDEIS UNIVERSITY · PI POCHAPSKY, THOMAS CHARLES · 2003 to 2003
$2.0M
Structural and Functional Analysis of Signaling Proteins in Dendritic SpinesR01NS056128 · NINDS · BROWN UNIVERSITY · PI PETI, WOLFGANG · 2007 to 2011
$1.7M
NCRR NIH HHS S10 RR017269NCRR NIH HHS S10-RR017269NINDS NIH HHS R01 NS056128NINDS NIH HHS R01NS056128
6 · The paper itself

Abstract

The innate immune system provides an initial line of defense against infection. Nucleotide-binding domain- and leucine-rich repeat-containing protein (NLR or (NOD-like)) receptors play a critical role in the innate immune response by surveying the cytoplasm for traces of intracellular invaders and endogenous stress signals. NLRs themselves are multi-domain proteins. Their N-terminal effector domains (typically a pyrin or caspase activation and recruitment domain) are responsible for driving downstream signaling and initiating the formation of inflammasomes, multi-component complexes necessary for cytokine activation. However, the currently available structures of NLR effector domains have not yet revealed the mechanism of their differential modes of interaction. Here, we report the structure and dynamics of the N-terminal pyrin domain of NLRP7 (NLRP7 PYD) obtained by NMR spectroscopy. The NLRP7 PYD adopts a six-alpha-helix bundle death domain fold. A comparison of conformational and dynamics features of the NLRP7 PYD with other PYDs showed distinct differences for helix alpha3 and loop alpha2-alpha3, which, in NLRP7, is stabilized by a strong hydrophobic cluster. Moreover, the NLRP7 and NLRP1 PYDs have different electrostatic surfaces. This is significant, because death domain signaling is driven by electrostatic contacts and stabilized by hydrophobic interactions. Thus, these results provide new insights into NLRP signaling and provide a first molecular understanding of inflammasome formation.

Indexed as

Cytoskeletal ProteinsProtein FoldingAdaptor Proteins, Signal TransducingCrystallography, X-RayHumansHydrophobic and Hydrophilic InteractionsProtein Structure, SecondaryProtein Structure, TertiaryPyrinStatic ElectricityStructure-Activity RelationshipAdaptor Proteins, Signal TransducingCytoskeletal ProteinsMEFV protein, humanNLRP7 protein, humanPyrin

Identifiers

PMID20547486
PMCPMC2930738

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.