Evidence map›Paper›PMID 20544014›Full record

ArticlePloS one2010

Cellular HIV-1 DNA levels in drug sensitive strains are equivalent to those in drug resistant strains in newly-diagnosed patients in Europe.

Victoria L Demetriou, David A M C van de Vijver, Ioanna Kousiappa, Claudia Balotta, Bonaventura Clotet, Zehava Grossman, Louise B Jørgensen, Snjezana Z Lepej, Itzchak Levy, Claus Nielsen and 9 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
0.5field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Molecular beacons in diagnostics.F1000 medicine reports · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 13 institutions in 11 countries.

Victoria L DemetriouDepartment of Biological Sciences, University of Cyprus, Nicosia, Cyprus.
David A M C van de Vijver
Ioanna Kousiappa
Claudia Balotta
Bonaventura Clotet
Zehava Grossman
Louise B Jørgensen
Snjezana Z Lepej
Itzchak Levy
Claus Nielsen
Dimitrios Paraskevis
Mario Poljak
Francois Roman
Lidia Ruiz
Jean-Claude Schmidt
Anne-Mieke Vandamme
Kristel Van Laethem
Jurgen Vercauteren
Leondios G Kostrikis
University of Cyprus · CYCentre Hospitalier de Luxembourg · LURega Institute for Medical Research · BEStatens Serum Institut · DKErasmus MC · NLHospital Universitari Germans Trias i Pujol · ESIrsiCaixa · ESKU Leuven · BENational and Kapodistrian University of Athens · GRSheba Medical Center · ILUniversity Hospital Centre Zagreb · HRUniversity of Ljubljana · SIUniversity of Milan · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHIV-1 genotypic drug resistance is an important threat to the success of antiretroviral therapy and transmitted resistance has reached 9% prevalence in Europe. Studies have demonstrated that HIV-1 DNA load in peripheral blood mononuclear cells (PBMC) have a predictive value for disease progression, independently of CD4 counts and plasma viral load. METHODOLOGY/PRINCIPAL

findingsMolecular-beacon-based real-time PCR was used to measure HIV-1 second template switch (STS) DNA in PBMC in newly-diagnosed HIV-1 patients across Europe. These patients were representative for the HIV-1 epidemic in the participating countries and were carrying either drug-resistant or sensitive viral strains. The assay design was improved from a previous version to specifically detect M-group HIV-1 and human CCR5 alleles. The findings resulted in a median of 3.32 log(10) HIV-1 copies/10(6) PBMC and demonstrated for the first time no correlation between cellular HIV-1 DNA load and transmitted drug-resistance. A weak association between cellular HIV-1 DNA levels with plasma viral RNA load and CD4(+) T-cell counts was also reconfirmed. Co-receptor tropism for 91% of samples, whether or not they conferred resistance, was CCR5. A comparison of pol sequences derived from RNA and DNA, resulted in a high similarity between the two. CONCLUSIONS/SIGNIFICANCE: An improved molecular-beacon-based real-time PCR assay is reported for the measurement of HIV-1 DNA in PBMC and has investigated the association between cellular HIV-1 DNA levels and transmitted resistance to antiretroviral therapy in newly-diagnosed patients from across Europe. The findings show no correlation between these two parameters, suggesting that transmitted resistance does not impact disease progression in HIV-1 infected individuals. The CCR5 co-receptor tropism predominance implies that both resistant and non-resistant strains behave similarly in early infection. Furthermore, a correlation found between RNA- and DNA-derived sequences in the pol region suggests that genotypic drug-resistance testing could be carried out on either template.

Indexed as

Drug Resistance, ViralAdultAllelesBase SequenceDNA PrimersDNA, ViralEuropeFemaleHIV-1HIV InfectionsHumansMalePolymerase Chain ReactionReceptors, CCR5Sequence Homology, Nucleic AcidViral LoadDNA PrimersDNA, ViralReceptors, CCR5

Identifiers

PMID20544014
PMCPMC2882320
OpenAlexW2153844564

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.