Evidence map›Paper›PMID 20540494›Full record

ArticleBiochemistry2010

Look and see if it is time to induce protein expression in Escherichia coli cultures.

K Danielle Kelley, Lorenzo Q Olive, Arina Hadziselimovic, Charles R Sanders

Open access · greenAbstract read
In one paragraph

Article in Biochemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

K Danielle KelleyDepartment of Biochemistry and Center for Structural Biology, Vanderbilt University School of Medicine, Nashville, Tennessee 37232-8725, USA.
Lorenzo Q Olive
Arina Hadziselimovic
Charles R Sanders
Vanderbilt University · US

Funding

Protein Structure and Dynamics from EPR Spectroscopy and MD SimulationsP01GM080513 · NIGMS · VANDERBILT UNIVERSITY · PI LYBRAND, TERRY P · 2008 to 2012
$5.6M
STRUCTURE OF DIACYLGLYCEROL KINASER01GM047485 · NIGMS · VANDERBILT UNIVERSITY · PI SANDERS, CHARLES R · 1997 to 2010
$2.9M
Structure, Folding, and Misfolding of PMP22R01NS058815 · NINDS · VANDERBILT UNIVERSITY · PI CARTER, BRUCE D, SANDERS, CHARLES R · 2010 to 2012
$921k
NIGMS NIH HHS P01 GM080513NIGMS NIH HHS R01 GM047485NIGMS NIH HHS R01 GM47485NINDS NIH HHS R01 NS058815
6 · The paper itself

Abstract

It is shown that Methyl Red can be used as an indicator dye that changes color in Escherichia coli culture as a result of time- and cell density-dependent bleaching by azoreductase produced by the bacteria. For cell cultures that are being used to express a recombinant protein, this phenomenon can be exploited to provide a simple visual cue that cell cultures have reached an appropriate growth phase for addition of an agent to induce protein expression, such as isopropyl thiogalactoside.

Indexed as

Azo CompoundsBacteriological TechniquesCloning, MolecularColoring AgentsEscherichia coliGene Expression RegulationIndicators and ReagentsIsopropyl ThiogalactosideNADH, NADPH OxidoreductasesNitroreductasesRecombinant ProteinsAzo CompoundsazoreductaseColoring AgentsIndicators and ReagentsIsopropyl Thiogalactosidemethyl redNADH, NADPH OxidoreductasesNitroreductasesRecombinant Proteins

Identifiers

PMID20540494
PMCPMC2896908
OpenAlexW2005632359

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.