Evidence map›Paper›PMID 20534590›Full record

ArticleThe Journal of biological chemistry2010

Der p 5 crystal structure provides insight into the group 5 dust mite allergens.

Geoffrey A Mueller, Rajendrakumar A Gosavi, Joseph M Krahn, Lori L Edwards, Matthew J Cuneo, Jill Glesner, Anna Pomés, Martin D Chapman, Robert E London, Lars C Pedersen

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Higher Wheal Sizes ofFrontiers in medicine · 2022
    Article
  7. Article
  8. A hybrid of two major Blomia tropicalis allergens as an allergy vaccine candidate.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2020
    Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Allergens of Blomia tropicalis: An Overview of Recombinant Molecules.International archives of allergy and immunology · 2017
    Review
  17. Article
  18. Indoor Allergens and Allergic Respiratory Disease.Current allergy and asthma reports · 2016
    Review
  19. Serological, genomic and structural analyses of the major mite allergen Der p 23.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2016
    Article
  20. Der f 21, a novel allergen from dermatophagoides farina.American journal of translational research · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Geoffrey A MuellerLaboratory of Structural Biology, National Institutes of Health, Research Triangle Park, North Carolina 27709, USA. mueller3@niehs.nih.gov
Rajendrakumar A Gosavi
Joseph M Krahn
Lori L Edwards
Matthew J Cuneo
Jill Glesner
Anna Pomés
Martin D Chapman
Robert E London
Lars C Pedersen
Research Triangle Park Foundation · USIndoor Biotechnologies (United States) · USNational Institute of Environmental Health Sciences · USNational Institutes of Health · US

Funding

Structural and Functional Characterization of AllergensZIAES102906 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI MUELLER, GEOFFREY · 2010 to 2025
$10.0M
Antigenic determinants of asthma-associated allergens for design of immunotherapy.R01AI077653 · NIAID · INDOOR BIOTECHNOLOGIES · PI MARTIN D. CHAPMAN, Maksymilian Chruszcz · 2009 to 2026
$9.5M
Crystallographic studies of macromolecular structuresZIAES102645 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI PEDERSEN, LARS · 2009 to 2017
$9.4M
NIAID NIH HHS R01 AI077653NIAID NIH HHS R01AI077653
6 · The paper itself

Abstract

Group 5 allergens from house dust mites elicit strong IgE antibody binding in mite-allergic patients. The structure of Der p 5 was determined by x-ray crystallography to better understand the IgE epitopes, to investigate the biologic function in mites, and to compare with the conflicting published Blo t 5 structures, designated 2JMH and 2JRK in the Protein Data Bank. Der p 5 is a three-helical bundle similar to Blo t 5, but the interactions of the helices are more similar to 2JMH than 2JRK. The crystallographic asymmetric unit contains three dimers of Der p 5 that are not exactly alike. Solution scattering techniques were used to assess the multimeric state of Der p 5 in vitro and showed that the predominant state was monomeric, similar to Blo t 5, but larger multimeric species are also present. In the crystal, the formation of the Der p 5 dimer creates a large hydrophobic cavity of approximately 3000 A(3) that could be a ligand-binding site. Many allergens are known to bind hydrophobic ligands, which are thought to stimulate the innate immune system and have adjuvant-like effects on IgE-mediated inflammatory responses.

Indexed as

Amino Acid SequenceAnimalsAntigens, DermatophagoidesArthropod ProteinsCrystallography, X-RayMitesModels, MolecularMolecular Sequence DataProtein Structure, SecondarySequence Homology, Amino AcidAntigens, DermatophagoidesArthropod ProteinsDermatophagoides pteronyssinus antigen p 5

Identifiers

PMID20534590
PMCPMC2919102
OpenAlexW2075999739

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.