Evidence map›Paper›PMID 20534557›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2010

Reverse biological engineering of hrdB to enhance the production of avermectins in an industrial strain of Streptomyces avermitilis.

Ying Zhuo, Wenquan Zhang, Difei Chen, Hong Gao, Jun Tao, Mei Liu, Zhongxuan Gou, Xianlong Zhou, Bang-Ce Ye, Qing Zhang and 2 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
4.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 95 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Sigma Factor Engineering inMicroorganisms · 2024
    Article
  6. Article
  7. Article
  8. Applications of synthetic biology in medical and pharmaceutical fields.Signal transduction and targeted therapy · 2023
    Review
  9. Rethinking Biosynthesis of Aclacinomycin A.Molecules (Basel, Switzerland) · 2023
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. The Application of Regulatory Cascades inFrontiers in microbiology · 2020
    Review
  19. Phosphate limitation increases coenzyme QSynthetic and systems biotechnology · 2019
    Article
  20. Recent advances in natural products exploitation inEngineering in life sciences · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Ying ZhuoKey Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100190, China.
Wenquan Zhang
Difei Chen
Hong Gao
Jun Tao
Mei Liu
Zhongxuan Gou
Xianlong Zhou
Bang-Ce Ye
Qing Zhang
Siliang Zhang
Li-Xin Zhang
Chinese Academy of Sciences · CNInstitute of Microbiology · CNEast China University of Science and Technology · CNHebei Chemical and Pharmaceutical College · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Avermectin and its analogues are produced by the actinomycete Streptomyces avermitilis and are widely used in the field of animal health, agriculture, and human health. Here we have adopted a practical approach to successfully improve avermectin production in an industrial overproducer. Transcriptional levels of the wild-type strain and industrial overproducer in production cultures were monitored using microarray analysis. The avermectin biosynthetic genes, especially the pathway-specific regulatory gene, aveR, were up-regulated in the high-producing strain. The upstream promoter region of aveR was predicted and proved to be directly recognized by sigma(hrdB) in vitro. A mutant library of hrdB gene was constructed by error-prone PCR and selected by high-throughput screening. As a result of evolved hrdB expressed in the modified avermectin high-producing strain, 6.38 g/L of avermectin B1a was produced with over 50% yield improvement, in which the transcription level of aveR was significantly increased. The relevant residues were identified to center in the conserved regions. Engineering of the hrdB gene can not only elicit the overexpression of aveR but also allows for simultaneous transcription of many other genes. The results indicate that manipulating the key genes revealed by reverse engineering can effectively improve the yield of the target metabolites, providing a route to optimize production in these complex regulatory systems.

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsBase SequenceBioengineeringDNA-Binding ProteinsDNA-Directed RNA PolymerasesGene LibraryGenetic EngineeringIvermectinMolecular Sequence DataMutationOligonucleotide Array Sequence AnalysisPromoter Regions, GeneticSequence Homology, Nucleic AcidSigma FactorStreptomycesavermectinBacterial ProteinsDNA-Binding ProteinsDNA-Directed RNA PolymerasesHrdB protein, StreptomycesIvermectinSigma Factor

Identifiers

PMID20534557
PMCPMC2895102
OpenAlexW1999851064

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.