Evidence map›Paper›PMID 20531406›Full record

ArticleMolecular systems biology2010

A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers.

Celine Lefebvre, Presha Rajbhandari, Mariano J Alvarez, Pradeep Bandaru, Wei Keat Lim, Mai Sato, Kai Wang, Pavel Sumazin, Manjunath Kustagi, Brygida C Bisikirska and 6 more

Open access · goldAbstract read
In one paragraph

Article in Molecular systems biology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 241 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
241citing papers in PubMed, 1 pooled it
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

241 citing papers in PubMed, 1 synthesis or guideline pooled it, 398 citations in OpenAlex.

  1. Pooled it
  2. Clinical and Genomic Characterization of Treatment-Emergent Small-Cell Neuroendocrine Prostate Cancer: A Multi-institutional Prospective Study.Journal of clinical oncology : official journal of the American Society of Clinical Oncology · 2018
    Trial
  3. Trial
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  7. Article
  8. From correlation to causation: cell-type-specific gene regulatory networks in Alzheimer's disease.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2026
    Article
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  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
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  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

181 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 1 country.

Celine LefebvreCenter for Computational Biology and Bioinformatics, Columbia University, New York, NY 10032, USA.
Presha Rajbhandari
Mariano J Alvarez
Pradeep Bandaru
Wei Keat Lim
Mai Sato
Kai Wang
Pavel Sumazin
Manjunath Kustagi
Brygida C Bisikirska
Katia Basso
Pedro Beltrao
Nevan Krogan
Jean Gautier
Riccardo Dalla-Favera
Andrea Califano
Columbia University · USUniversity of California, San Francisco · USCancer Genetics (United States) · US

Funding

Nation Center: Multi-Scale Study- Cellular Networks(RMI)U54CA121852 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2005 to 2015
$37.4M
Gene expression of cocaine dependence and relapseR01DA013821 · NIDA · SCRIPPS RESEARCH INSTITUTE, THE · PI SANNA, PIETRO P · 2000 to 2012
$3.3M
Regulatory Modules in Normal and Transformed B-CellsR01AI066116 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2005 to 2009
$2.5M
Genetic Analysis of the Nucleosome and RNA Polymerase II: A Systems ApproachR01GM084448 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KROGAN, NEVAN J · 2008 to 2012
$2.3M
Collaborative study on the systems biology of vulnerability to stressR01GM085659 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI CALIFANO, ANDREA, SANNA, PIETRO P · 2008 to 2011
$2.0M
Genetic Network Inference with Combinational PhenotypesR01CA109755 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2005 to 2009
$1.9M
NCI NIH HHS R01 CA109755NCI NIH HHS R01CA109755NCI NIH HHS U54 CA121852NCI NIH HHS U54CA121852NIAID NIH HHS R01 AI066116NIAID NIH HHS R01AI066116NIDA NIH HHS 5R01DA013821-06NIDA NIH HHS R01 DA013821NIGMS NIH HHS 5R01GM085659-02NIGMS NIH HHS R01 GM084448NIGMS NIH HHS R01 GM085659
6 · The paper itself

Abstract

Assembly of a transcriptional and post-translational molecular interaction network in B cells, the human B-cell interactome (HBCI), reveals a hierarchical, transcriptional control module, where MYB and FOXM1 act as synergistic master regulators of proliferation in the germinal center (GC). Eighty percent of genes jointly regulated by these transcription factors are activated in the GC, including those encoding proteins in a complex regulating DNA pre-replication, replication, and mitosis. These results indicate that the HBCI analysis can be used for the identification of determinants of major human cell phenotypes and provides a paradigm of general applicability to normal and pathologic tissues.

Indexed as

AlgorithmsApoptosisB-LymphocytesCell LineCell ProliferationCell SurvivalDNA ReplicationFeedback, PhysiologicalForkhead Box Protein M1Forkhead Transcription FactorsGene Expression RegulationGene SilencingGenes, RegulatorGerminal CenterHumansMitosisForkhead Box Protein M1Forkhead Transcription FactorsFOXM1 protein, humanMultiprotein ComplexesProto-Oncogene Proteins c-myb

Identifiers

PMID20531406
PMCPMC2913282
OpenAlexW2105031411

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.