ArticleNucleic acids research2010
CCancer: a bird's eye view on gene lists reported in cancer-related studies.
Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers, 1 of them a synthesis that pooled it.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
20 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Large scale integration of drug-target information reveals poly-pharmacological drug action mechanisms in tumor cell line growth inhibition assays.Oncotarget · 2014Pooled it
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- CancerDiscover: an integrative pipeline for cancer biomarker and cancer class prediction from high-throughput sequencing data.Oncotarget · 2018Article
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- JUN dependency in distinct early and late BRAF inhibition adaptation states of melanoma.Cell discovery · 2016Article
- TAp73 transcriptionally represses BNIP3 expression.Cell cycle (Georgetown, Tex.) · 2015Article
- Polypharmacology of small molecules targeting the ubiquitin-proteasome and ubiquitin-like systems.Oncotarget · 2015Review
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- PPISURV: a novel bioinformatics tool for uncovering the hidden role of specific genes in cancer survival outcome.Oncogene · 2014Article
- Identifying resistance mechanisms against five tyrosine kinase inhibitors targeting the ERBB/RAS pathway in 45 cancer cell lines.PloS one · 2013Article
- Integrated Analysis Reveals hsa-miR-142 as a Representative of a Lymphocyte-Specific Gene Expression and Methylation Signature.Cancer informatics · 2012Article
- GeneSigDB: a manually curated database and resource for analysis of gene expression signatures.Nucleic acids research · 2012Article
- Multi-edge gene set networks reveal novel insights into global relationships between biological themes.PloS one · 2012Article
- Liverome: a curated database of liver cancer-related gene signatures with self-contained context information.BMC genomics · 2011Article
- BioProfiling.de: analytical web portal for high-throughput cell biology.Nucleic acids research · 2011Article
- Molecular signatures database (MSigDB) 3.0.Bioinformatics (Oxford, England) · 2011Article
- δ-Tocotrienol and quercetin reduce serum levels of nitric oxide and lipid parameters in female chickens.Lipids in health and disease · 2011Article
- MIPS: curated databases and comprehensive secondary data resources in 2010.Nucleic acids research · 2011Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
CCancer is an automatically collected database of gene lists, which were reported mostly by experimental studies in various biological and clinical contexts. At the moment, the database covers 3369 gene lists extracted from 2644 papers published in approximately 80 peer-reviewed journals. As input, CCancer accepts a gene list. An enrichment analyses is implemented to generate, as output, a highly informative survey over recently published studies that report gene lists, which significantly intersect with the query gene list. A report on gene pairs from the input list which were frequently reported together by other biological studies is also provided. CCancer is freely available at http://mips.helmholtz-muenchen.de/proj/ccancer.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.