Evidence map›Paper›PMID 20529298›Full record

ArticleVirology journal2010

Human immunodeficiency virus type 1 Vpr: oligomerization is an essential feature for its incorporation into virus particles.

Narasimhan J Venkatachari, Leah A Walker, Oznur Tastan, Thien Le, Timothy M Dempsey, Yaming Li, Naveena Yanamala, Alagarsamy Srinivasan, Judith Klein-Seetharaman, Ronald C Montelaro and 1 more

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. The HIV-1 Vpr Protein: A Multifaceted Target for Therapeutic Intervention.International journal of molecular sciences · 2017
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. HIV-1 Vpr-a still "enigmatic multitasker".Frontiers in microbiology · 2014
    Review
  15. DOT2: Macromolecular docking with improved biophysical models.Journal of computational chemistry · 2013
    Article
  16. Article
  17. Article
  18. Delineating HIV-associated neurocognitive disorders using transgenic models: the neuropathogenic actions of Vpr.Journal of neuroimmune pharmacology : the official journal of the Society on NeuroImmune Pharmacology · 2012
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Narasimhan J VenkatachariDepartment of Infectious Diseases and Microbiology, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, PA, USA.
Leah A Walker
Oznur Tastan
Thien Le
Timothy M Dempsey
Yaming Li
Naveena Yanamala
Alagarsamy Srinivasan
Judith Klein-Seetharaman
Ronald C Montelaro
Velpandi Ayyavoo
University of Pittsburgh · USCarnegie Mellon University · USNanoBio (United States) · US

Funding

X-Ray Core P50GM082251 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CALERO, GUILLERMO ALBERTO · 2007 to 2018
$48.1M
IMMUNOPATHOLOGY OF HIV-1 VPRR56AI050463 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI AYYAVOO, VELPANDI · 2007 to 2007
$362k
NIAID NIH HHS R56 AI050463NIGMS NIH HHS GM082251NIGMS NIH HHS P50 GM082251
6 · The paper itself

Abstract

HIV-1 Vpr, a nonstructural viral protein associated with virus particles, has a positive role in the efficient transport of PIC into the nucleus of non-dividing target cells and enhances virus replication in primary T cells. Vpr is a 96 amino acid protein and the structure by NMR shows three helical domains. Vpr has been shown to exist as dimers and higher order oligomers. Considering the multifunctional nature of Vpr, the contribution of distinct helical domains to the dimer/oligomer structure of Vpr and the relevance of this feature to its functions are not clear. To address this, we have utilized molecular modeling approaches to identify putative models of oligomerization. The predicted interface residues were subjected to site-directed mutagenesis and evaluated their role in intermolecular interaction and virion incorporation. The interaction between Vpr molecules was monitored by Bimolecular Fluorescence complementation (BiFC) method. The results show that Vpr forms oligomers in live cells and residues in helical domains play critical roles in oligomerization. Interestingly, Vpr molecules defective in oligomerization also fail to incorporate into the virus particles. Based on the data, we suggest that oligomerization of Vpr is essential for virion incorporation property and may also have a role in the events associated with virus infection.

Indexed as

Amino Acid SequenceCell LineHIV-1HumansMolecular ConformationMolecular Sequence DataProtein Structure, TertiarySequence AlignmentVirionvpr Gene Products, Human Immunodeficiency Virusvpr Gene Products, Human Immunodeficiency Virus

Identifiers

PMID20529298
PMCPMC2894018
OpenAlexW2123883108

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.