Evidence map›Paper›PMID 20529287›Full record

ArticleBMC genomics2010

Transcriptomic responses in mouse brain exposed to chronic excess of the neurotransmitter glutamate.

Xinkun Wang, Xiaodong Bao, Ranu Pal, Abdulbaki Agbas, Elias K Michaelis

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Xinkun WangHiguchi Biosciences Center, 2099 Constant Ave, The University of Kansas, Lawrence, KS 66047, USA. xwang@ku.edu
Xiaodong Bao
Ranu Pal
Abdulbaki Agbas
Elias K Michaelis
University of Kansas · US

Funding

Research Design and Analysis Core (RDAC)P30HD002528 · NICHD · UNIVERSITY OF KANSAS LAWRENCE · PI FOWLER, STEPHEN CLETIUS · 1985 to 2015
$22.1M
University of Kansas Alzheimer's Disease Core CentersP30AG035982 · NIA · UNIVERSITY OF KANSAS MEDICAL CENTER · PI SWERDLOW, RUSSELL H. · 2011 to 2020
$16.6M
SARCOPENIA AND APOPTOSIS: ROLE OF SERCA AND BCL-2P01AG012993 · NIA · UNIVERSITY OF KANSAS LAWRENCE · PI MICHAELIS, ELIAS K · 1995 to 2012
$14.0M
MOLECULAR ACTIONS OF ALCOHOL IN BRAIN-MODEL MEMBRANESR01AA004732 · NIAAA · UNIVERSITY OF KANSAS LAWRENCE · PI MICHAELIS, ELIAS K · 1985 to 1999
–
ANTIBODIES TO NMDA RECEPTOR SUBUNITS ALTERED BY ETHANOLR01AA011419 · NIAAA · UNIVERSITY OF KANSAS LAWRENCE · PI MICHAELIS, ELIAS K · 1996 to 1999
–
MOLECULAR ACTIONS OF ALCOHOL IN BRAIN-MODEL MEMBRANESR37AA004732 · NIAAA · UNIVERSITY OF KANSAS LAWRENCE · PI MICHAELIS, ELIAS K · 1987 to 1994
–
NIA NIH HHS AG12993NIA NIH HHS P01 AG012993NIA NIH HHS P30 AG035982NICHD NIH HHS HD02528
6 · The paper itself

Abstract

backgroundIncreases during aging in extracellular levels of glutamate (Glu), the major excitatory neurotransmitter in the brain, may be linked to chronic neurodegenerative diseases. Little is known about the molecular responses of neurons to chronic, moderate increases in Glu levels. Genome-wide gene expression in brain hippocampus was examined in a unique transgenic (Tg) mouse model that exhibits moderate Glu hyperactivity throughout the lifespan, the neuronal Glutamate dehydrogenase (Glud1) mouse, and littermate 9 month-old wild type mice.

resultsIntegrated bioinformatic analyses on transcriptomic data were used to identify bio-functions, pathways and gene networks underlying neuronal responses to increased Glu synaptic release. Bio-functions and pathways up-regulated in Tg mice were those associated with oxidative stress, cell injury, inflammation, nervous system development, neuronal growth, and synaptic transmission. Increased gene expression in these functions and pathways indicated apparent compensatory responses offering protection against stress, promoting growth of neuronal processes (neurites) and re-establishment of synapses. The transcription of a key gene in the neurite growth network, the kinase Ptk2b, was significantly up-regulated in Tg mice as was the activated (phosphorylated) form of the protein. In addition to genes related to neurite growth and synaptic development, those associated with neuronal vesicle trafficking in the Huntington's disease signalling pathway, were also up-regulated.

conclusionsThis is the first study attempting to define neuronal gene expression patterns in response to chronic, endogenous Glu hyperactivity at brain synapses. The patterns observed were characterized by a combination of responses to stress and stimulation of nerve growth, intracellular transport and recovery.

Indexed as

Gene Expression ProfilingAmino AcidsAnimalsBiological TransportBrainCalcium SignalingChemokinesFocal Adhesion Kinase 2Gene Expression Regulation, EnzymologicGene Regulatory NetworksGenomicsGlutamate DehydrogenaseGlutamic AcidHippocampusHuntington DiseaseIntracellular SpaceAmino AcidsChemokinesFocal Adhesion Kinase 2Glutamate DehydrogenaseGlutamic AcidNeurotransmitter AgentsPhosphoproteinsPtk2b protein, mouseToll-Like Receptors

Identifiers

PMID20529287
PMCPMC2896956
OpenAlexW2135727583

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.