Evidence map›Paper›PMID 20525690›Full record

ArticleThe Journal of biological chemistry2010

Structural characterization of HIV gp41 with the membrane-proximal external region.

Wuxian Shi, Jen Bohon, Dong P Han, Habtom Habte, Yali Qin, Michael W Cho, Mark R Chance

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Structure of the membrane proximal external region of HIV-1 envelope glycoprotein.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  5. Article
  6. Article
  7. Article
  8. Article
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  13. Article
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  15. Article
  16. Synchrotron X-ray footprinting on tour.Journal of synchrotron radiation · 2014
    Article
  17. Pushing the endogenous envelope.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2013
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Wuxian ShiCenter for Synchrotron Biosciences, Case Western Reserve University, Cleveland, OH 44106, USA. wushi@bnl.gov
Jen Bohon
Dong P Han
Habtom Habte
Yali Qin
Michael W Cho
Mark R Chance

Funding

Case Center for Synchrotron BiosciencesP30EB009998 · NIBIB · CASE WESTERN RESERVE UNIVERSITY · PI CHANCE, MARK R · 2009 to 2018
$8.4M
Structural Evaluation of HIV-1 Envelope GycoproteinP01AI074286 · NIAID · IOWA STATE UNIVERSITY · PI CHO, MICHAEL W · 2008 to 2012
$5.0M
NIAID NIH HHS P01 AI074286NIAID NIH HHS P01-AI-074286NIBIB NIH HHS P30 EB009998NIBIB NIH HHS P30-EB-09998
6 · The paper itself

Abstract

Human immunodeficiency virus, type 1 (HIV-1) envelope glycoprotein (gp120/gp41) plays a critical role in virus infection and pathogenesis. Three of the six monoclonal antibodies considered to have broadly neutralizing activities (2F5, 4E10, and Z13e1) bind to the membrane-proximal external region (MPER) of gp41. This makes the MPER a desirable template for developing immunogens that can elicit antibodies with properties similar to these monoclonal antibodies, with a long term goal of developing antigens that could serve as novel HIV vaccines. In order to provide a structural basis for rational antigen design, an MPER construct, HR1-54Q, was generated for x-ray crystallographic and x-ray footprinting studies to provide both high resolution atomic coordinates and verification of the solution state of the antigen, respectively. The crystal structure of HR1-54Q reveals a trimeric, coiled-coil six-helical bundle, which probably represents a postfusion form of gp41. The MPER portion extends from HR2 in continuation of a slightly bent long helix and is relatively flexible. The structures observed for the 2F5 and 4E10 epitopes agree well with existing structural data, and enzyme-linked immunosorbent assays indicate that the antigen binds well to antibodies that recognize the above epitopes. Hydroxyl radical-mediated protein footprinting of the antigen in solution reveals specifically protected and accessible regions consistent with the predictions based on the trimeric structure from the crystallographic data. Overall, the HR1-54Q antigen, as characterized by crystallography and footprinting, represents a postfusion, trimeric form of HIV gp41, and its structure provides a rational basis for gp41 antigen design suitable for HIV vaccine development.

Indexed as

AIDS VaccinesAmino Acid SequenceAntigensCell MembraneCrystallography, X-RayDrug DesignEnzyme-Linked Immunosorbent AssayEpitopesHIV-1HIV Envelope Protein gp41Hydroxyl RadicalMass SpectrometryMolecular Sequence DataProtein BindingProtein ConformationAIDS VaccinesAntigensEpitopesHIV Envelope Protein gp41Hydroxyl Radical

Identifiers

PMID20525690
PMCPMC2911339

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.