Evidence map›Paper›PMID 20519468›Full record

ArticleJournal of clinical microbiology2010

Genetic diversity and virulence profiles of Escherichia coli isolates causing spontaneous bacterial peritonitis and bacteremia in patients with cirrhosis.

Frédéric Bert, James R Johnson, Bénédicte Ouattara, Véronique Leflon-Guibout, Brian Johnston, Estelle Marcon, Dominique Valla, Richard Moreau, Marie-Hélène Nicolas-Chanoine

Abstract read
In one paragraph

Article in Journal of clinical microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Molecular epidemiology of blaAnnals of clinical microbiology and antimicrobials · 2021
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  10. Inhibition of Antimicrobial-ResistantFrontiers in microbiology · 2021
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  13. UropathogenicProceedings of the National Academy of Sciences of the United States of America · 2019
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  15. Discovery ofmSphere · 2018
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  16. Article
  17. The gut microbiome and liver cancer: mechanisms and clinical translation.Nature reviews. Gastroenterology & hepatology · 2017
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Frédéric BertService de Microbiologie, Hôpital Beaujon, 100 Boulevard du Général Leclerc, 92110 Clichy, France. frederic.bert@bjn.aphp.fr
James R Johnson
Bénédicte Ouattara
Véronique Leflon-Guibout
Brian Johnston
Estelle Marcon
Dominique Valla
Richard Moreau
Marie-Hélène Nicolas-Chanoine

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Among patients with cirrhosis, infections caused by Escherichia coli organisms that translocate from the gut are a frequent and severe complication. One hundred ten E. coli isolates from 110 cirrhotic patients with spontaneous bacterial peritonitis and/or spontaneous bacteremia were characterized for their phylogenetic group and virulence genotype (34 extraintestinal virulence factor genes). Genetic relatedness was investigated by enterobacterial repetitive intergenic consensus sequence type 2 (ERIC-2) PCR typing and multilocus sequence typing. Phylogenetic groups A, B1, B2, and D accounted for 24%, 4%, 48%, and 24% of the population, respectively. Overall, 68 distinct ERIC-2 profiles were encountered. Eleven clonal groups, represented by multiple isolates (2 to 11) from the same sequence type (ST) or sequence type complex, were identified. These clonal groups accounted for 54 (49%) isolates overall. Membership in one of these clonal groups was more frequent among B2 isolates than non-B2 isolates (67% versus 32%, P < 0.001). The most frequent sequence types were ST95 (n = 13) and ST73 (n = 8), followed by the ST14 and ST10 complexes (n = 7). ST131 and ST69 were represented by three isolates each. Clonal group-associated isolates exhibited a greater prevalence of 11 virulence genes, including pap elements, than the other isolates. However, no association between clonal groups and host factors, type of infection, or mortality was observed. In conclusion, E. coli isolates causing spontaneous bacterial peritonitis and bacteremia in cirrhotic patients are genetically diverse. However, approximately half of the isolates belong to familiar clonal groups and exhibit extensive virulence profiles that may be associated with greater invasive potential.

Indexed as

Genetic VariationAdultAgedBacteremiaBacterial Typing TechniquesCluster AnalysisDNA, BacterialDNA FingerprintingEscherichia coliEscherichia coli InfectionsEscherichia coli ProteinsFemaleGenotypeHumansLiver CirrhosisMaleDNA, BacterialEscherichia coli ProteinsVirulence Factors

Identifiers

PMID20519468
PMCPMC2916625

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.