Evidence map›Paper›PMID 20519466›Full record

ArticleJournal of clinical microbiology2010

Detection of large numbers of pneumococcal virulence genes in streptococci of the mitis group.

Calum Johnston, Jason Hinds, Andrew Smith, Mark van der Linden, Johan Van Eldere, Tim J Mitchell

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
4.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 82 citations in OpenAlex.

  1. Trial
  2. Review
  3. Journal of oral microbiology · 2025
    Article
  4. Article
  5. Article
  6. The Molecular Approaches and Challenges ofPolish journal of microbiology · 2023
    Review
  7. Investigating theMicrobiology (Reading, England) · 2022
    Article
  8. Article
  9. Article
  10. Identification of Streptococcus pneumoniae and other Mitis streptococci: importance of molecular methods.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2020
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Frontiers in cellular and infection microbiology · 2019
    Article
  17. PcsB Expression Diversity Influences onFrontiers in microbiology · 2019
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Calum JohnstonDivision of Infection and Immunity, University of Glasgow, B2-28, GBRC, 120 University Place, Glasgow G12 8TA, United Kingdom.
Jason Hinds
Andrew Smith
Mark van der Linden
Johan Van Eldere
Tim J Mitchell
University of Glasgow · GBKU Leuven · BESt George's, University of London · GBUniversitätsklinikum Aachen · DE

Funding

Medical Research CouncilWellcome Trust 086547
6 · The paper itself

Abstract

Seven streptococcal isolates from the mitis group were analyzed for the presence of pneumococcal gene homologues by comparative genomic hybridization studies with microarrays based on open reading frames from the genomes of Streptococcus pneumoniae TIGR4 and R6. The diversity of pneumolysin (ply) and neuraminidase A (nanA) gene sequences was explored in more detail in a collection of 14 S. pseudopneumoniae and 29 mitis group isolates, respectively. The mitis group isolates used in the microarray experiments included a type strain (NCTC 12261), two S. mitis isolates from the nasopharynxes of children, one S. mitis isolate from a case of infective endocarditis, one S. mitis isolate from a dental abscess, and one S. oralis isolate and one S. pseudopneumoniae isolate from the nasopharynxes of children. The results of the microarray study showed that the 5 S. mitis isolates had homologues to between 67 and 82% of pneumococcal virulence genes, S. oralis hybridized to 83% of pneumococcal virulence genes, and S. pseudopneumoniae hybridized to 92% of identified pneumococcal virulence genes. Comparison of the pneumolysin, mitilysin (mly), and newly identified pseudopneumolysin (pply) gene sequences revealed that mly and pply genes are more closely related to each other than either is to ply. In contrast, the nanA gene sequences in the pneumococcus and streptococci from the mitis group are closely clustered together, sharing 99.4 to 99.7% sequence identity with pneumococcal nanA alleles.

Indexed as

Bacterial ProteinsComparative Genomic HybridizationDNA, BacterialHumansMicroarray AnalysisMolecular Sequence DataNeuraminidaseSequence Analysis, DNAStreptococcal InfectionsStreptococcus mitisStreptococcus pneumoniaeStreptolysinsVirulence FactorsBacterial ProteinsDNA, BacterialNeuraminidaseplY protein, Streptococcus pneumoniaeStreptolysinsVirulence Factors

Identifiers

PMID20519466
PMCPMC2916619
OpenAlexW2142209816

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.