Evidence map›Paper›PMID 20516587›Full record

ArticleActa crystallographica. Section F, Structural biology and crystallization communications2010

Structure of photosynthetic glyceraldehyde-3-phosphate dehydrogenase (isoform A4) from Arabidopsis thaliana in complex with NAD.

Simona Fermani, Francesca Sparla, Lucia Marri, Anton Thumiger, Paolo Pupillo, Giuseppe Falini, Paolo Trost

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology and crystallization communications, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Deciphering the Binding of Salicylic Acid toInternational journal of molecular sciences · 2020
    Article
  4. Crystal Structure of Chloroplastic Thioredoxin f2 fromAntioxidants (Basel, Switzerland) · 2018
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Simona FermaniDepartment of Chemistry, University of Bologna, Via Selmi 2, 40126 Bologna, Italy.
Francesca Sparla
Lucia Marri
Anton Thumiger
Paolo Pupillo
Giuseppe Falini
Paolo Trost
University of Bologna · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The crystal structure of the A(4) isoform of photosynthetic glyceraldehyde-3-phosphate dehydrogenase (GAPDH) from Arabidopsis thaliana, expressed in recombinant form and complexed with NAD, is reported. The crystals, which were grown in 2.4 M ammonium sulfate and 0.1 M sodium citrate, belonged to space group I222. The asymmetric unit includes ten subunits, i.e. two independent tetramers plus a dimer that generates a third tetramer by a crystallographic symmetry operation. The crystal structure was solved by molecular replacement and refined to an R factor of 23.7% and an R(free) factor of 28.9% at 2.6 A resolution. In the final model, each subunit binds one NAD(+) molecule and two sulfates, which occupy the P(s) and the P(i) anion-binding sites. Detailed knowledge of this structure is instrumental for structural investigation of supramolecular complexes of A(4)-GAPDH, phosphoribulokinase and CP12, which are involved in the regulation of photosynthesis in the model plant A. thaliana.

Indexed as

ArabidopsisCrystallography, X-RayGlyceraldehyde-3-Phosphate DehydrogenasesIsoenzymesModels, MolecularNADProtein BindingProtein FoldingProtein Structure, QuaternaryProtein Structure, TertiaryProtein SubunitsSpinacia oleraceaStructural Homology, ProteinGlyceraldehyde-3-Phosphate DehydrogenasesIsoenzymesNADProtein Subunits

Identifiers

PMID20516587
PMCPMC2882757
OpenAlexW2081365944

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.