Evidence map›Paper›PMID 20513411›Full record

ArticleBiophysical journal2010

Molecular dynamics simulations of anti-aggregation effect of ibuprofen.

Wenling E Chang, Takako Takeda, E Prabhu Raman, Dmitri K Klimov

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. [Current radiopharmaceuticals · 2019
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4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Wenling E ChangDepartment of Bioinformatics and Computational Biology, George Mason University, Manassas, Virginia, USA.
Takako Takeda
E Prabhu Raman
Dmitri K Klimov
George Mason University · USUniversity of Maryland, Baltimore · US

Funding

Pathways of Alzehimer's amyloid assembly studied by computer simulationsR01AG028191 · NIA · GEORGE MASON UNIVERSITY · PI KLIMOV, DMITRI KONSTANTINOVICH · 2007 to 2009
$490k
NIA NIH HHS R01 AG028191
6 · The paper itself

Abstract

Using implicit solvent molecular dynamics and replica exchange simulations, we study the impact of ibuprofen on the growth of wild-type Abeta fibrils. We show that binding of ibuprofen to Abeta destabilizes the interactions between incoming peptides and the fibril. As a result, ibuprofen interference modifies the free energy landscape of fibril growth and reduces the free energy gain of Abeta peptide binding to the fibril by approximately 2.5 RT at 360 K. Furthermore, ibuprofen interactions shift the thermodynamic equilibrium from fibril-like locked states to disordered docked states. Ibuprofen's anti-aggregation effect is explained by its competition with incoming Abeta peptides for the same binding site located on the fibril edge. Although ibuprofen impedes fibril growth, it does not significantly change the mechanism of fibril elongation or the structure of Abeta peptides bound to the fibril.

Indexed as

Molecular Dynamics SimulationAmyloidAmyloid beta-PeptidesIbuprofenPeptide FragmentsProtein MultimerizationProtein Structure, QuaternaryTemperatureThermodynamicsWaterAmyloidAmyloid beta-PeptidesIbuprofenPeptide FragmentsWater

Identifiers

PMID20513411
PMCPMC2877328
OpenAlexW2013658448

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.