Evidence map›Paper›PMID 20513386›Full record

ArticleBiophysical journal2010

Event ordering in live-cell imaging determined from temporal cross-correlation asymmetry.

Daniel R Sisan, Defne Yarar, Clare M Waterman, Jeffrey S Urbach

Abstract read
In one paragraph

Article in Biophysical journal, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Statistics and Related Topics in Single-Molecule Biophysics.Annual review of statistics and its application · 2014
    Article
  4. Article
  5. Quantitation of ten 30S ribosomal assembly intermediates using fluorescence triple correlation spectroscopy.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Daniel R SisanDepartment of Physics, Georgetown University, Washington, District of Columbia, USA. dan.sisan@gmail.com
Defne Yarar
Clare M Waterman
Jeffrey S Urbach

Funding

Mechanical Regulation of Cell AdhesionZIAHL005104 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI WATERMAN, CLARE MICHAL · 2009 to 2025
$30.9M
Integration of Actin Dynamics and Adhesion in Cell MigrationZIAHL005105 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI WATERMAN, CLARE MICHAL · 2009 to 2025
$16.5M
6 · The paper itself

Abstract

We use the temporal asymmetry of the cross-correlation function to determine the temporal ordering of spatially localized cellular events in live-cell multichannel fluorescence imaging. The analysis is well suited to noisy, stochastic systems where the temporal order may not be apparent in the raw data. The approach is applicable to any biochemical reaction not in chemical equilibrium, including protein complex assembly, sequential enzymatic processes, gene regulation, and other cellular signaling events. As an automated quantitative measure, this approach allows the data to be readily interpreted statistically with minimal subjective biases. We first test the technique using simulations of simple biophysical models with a definite temporal ordering. We then demonstrate the approach by extracting the temporal ordering of three proteins-actin, sorting nexin 9, and clathrin-in the endocytic pathway.

Indexed as

Cell Physiological PhenomenaComputer SimulationModels, BiologicalActinsAlgorithmsAnimalsCarrier ProteinsCell LineChlorocebus aethiopsClathrinMicroscopy, FluorescenceMonte Carlo MethodProteinsSignal Processing, Computer-AssistedSignal TransductionSorting NexinsActinsCarrier ProteinsClathrinProteinsSorting NexinsVesicular Transport Proteins

Identifiers

PMID20513386
PMCPMC2877330

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.