Evidence map›Paper›PMID 20511563›Full record

ArticleJournal of dental research2010

Novel cleft susceptibility genes in chromosome 6q.

A Letra, R Menezes, R F Fonseca, M Govil, T McHenry, M J Murphy, J D Hennebold, J M Granjeiro, E E Castilla, I M Orioli and 4 more

Abstract read
In one paragraph

Article in Journal of dental research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Global medical genetics · 2020
    Article
  5. Article
  6. Article
  7. Article
  8. An RNA-seq protocol to identify mRNA expression changes in mouse diaphyseal bone: applications in mice with bone property altering Lrp5 mutations.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2013
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 9 institutions in 4 countries.

A LetraDepartment of Oral Biology and Center for Craniofacial and Dental Genetics, University of Pittsburgh, 614 Salk Hall, 3501 Terrace Street, Pittsburgh, PA 15261, USA.
R Menezes
R F Fonseca
M Govil
T McHenry
M J Murphy
J D Hennebold
J M Granjeiro
E E Castilla
I M Orioli
R Martin
M L Marazita
B C Bjork
A R Vieira
Universidade Federal do Rio de Janeiro · BRBrigham and Women's Hospital · USNational Institute on Population Medical Genetics · BROregon Health & Science University · USOregon National Primate Research Center · USSaint Louis University · USUniversidade Federal Fluminense · BRUniversity of Dental Medicine · MMUniversity of Pittsburgh · US

Funding

YR 50 PROJ- ROBERTS PRIMATE ISLETP51RR000163 · NCRR · OREGON REGIONAL PRIMATE RESEARCH CENTER · PI FRUH, KLAUS J · 1985 to 2011
$140.8M
Extending the Phenotype of Nonsyndromic Orofacial CleftsR01DE016148 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L., WEINBERG, SETH M · 2004 to 2018
$19.7M
Nonhuman Primate Contraceptive CoreU54HD055744 · NICHD · OREGON HEALTH & SCIENCE UNIVERSITY · PI STOUFFER, RICHARD L · 2007 to 2016
$13.8M
PHENOTYPE AND GENETICS IN OROFACIAL CLEFT FAMILIESP50DE016215 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2004 to 2008
$10.1M
Prostaglandin Synthesis and Action in the Primate Corpus LuteumR01HD042000 · NICHD · OREGON HEALTH & SCIENCE UNIVERSITY · PI HENNEBOLD, JON D · 2002 to 2010
$2.6M
GENETIC MAPPING STUDIES OF ORAL-FACIAL CLEFTS IN CHINAR01DE009886 · NIDCR · VIRGINIA COMMONWEALTH UNIVERSITY · PI MARAZITA, MARY L · 1992 to 2002
$1.0M
Clefts/Craniofacial Anomalies and Cancer SusceptibilityR00DE018413 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI SILVA, RENATO MENEZES · 2010 to 2012
$722k
Statistical Genetic Analysis of Complex Craniofacial and Dental Genetic DisordersR00DE018085 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GOVIL, MANIKA · 2011 to 2013
$709k
REPRODUCTIVE STEROIDS AND EXPERIMENTAL STROKEK01RR000163 · NCRR · OREGON HEALTH AND SCIENCE UNIVERSITY · PI MURPHY, STEPHANIE J · 2000 to 2004
$479k
Dental anomalies as an extended phenotype for cleftsR21DE016718 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI VIEIRA, ALEXANDRE REZENDE · 2005 to 2006
$402k
Statistical Genetic Analysis of Complex Craniofacial and Dental Genetic DisordersK99DE018085 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GOVIL, MANIKA · 2009 to 2010
$308k
Planning International Orofacial Cleft Genetic StudiesR21DE016930 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L · 2006 to 2007
$293k
NCRR NIH HHS K01 RR000163NCRR NIH HHS P51 RR000163NCRR NIH HHS RR00163NICHD NIH HHS R01 HD042000NICHD NIH HHS R01-HD42000NICHD NIH HHS U54 HD055744NICHD NIH HHS U54-HD55744NIDCR NIH HHS K99 DE018085NIDCR NIH HHS K99-DE018085NIDCR NIH HHS K99 DE018413NIDCR NIH HHS K99-DE018413NIDCR NIH HHS K99 DE018954NIDCR NIH HHS K99-DE018954NIDCR NIH HHS P50 DE016215NIDCR NIH HHS P50-DE016215NIDCR NIH HHS R00 DE018085NIDCR NIH HHS R00 DE018413NIDCR NIH HHS R01 DE009886NIDCR NIH HHS R01 DE012472NIDCR NIH HHS R01 DE016148NIDCR NIH HHS R01-DE016148NIDCR NIH HHS R01-DE09886NIDCR NIH HHS R01-DE12472NIDCR NIH HHS R21 DE016718NIDCR NIH HHS R21 DE016930NIDCR NIH HHS R21-DE016930NIDCR NIH HHS R21-DE16718
6 · The paper itself

Abstract

Cleft lip/palate is a defect of craniofacial development. In previous reports, chromosome 6q has been suggested as a candidate region for cleft lip/palate. A multipoint posterior probability of linkage analysis of multiplex families from the Philippines attributed an 88% probability of harboring a cleft-susceptibility gene to a narrower region on bands 6q14.2-14.3. We genotyped 2732 individuals from families and unrelated individuals with and without clefts to investigate the existence of possible cleft-susceptibility genes in this region. We found association of PRSS35 and SNAP91 genes with cleft lip/palate in the case-control cohort and in Caucasian families. Haplotype analyses support the individual associations with PRSS35. We found Prss35 expression in the head and palate of mouse embryos at critical stages for palatogenesis, whereas Snap91 was expressed in the adult brain. We provide further evidence of the involvement of chromosome 6q in cleft lip/palate and suggest PRSS35 as a novel candidate gene.

Indexed as

Chromosomes, Human, Pair 6Genetic Predisposition to DiseaseAnimalsBrazilCase-Control StudiesChi-Square DistributionCleft LipCleft PalateDatabases, GeneticGene FrequencyGenetic LociHaplotypesHumansLinkage DisequilibriumMiceMonomeric Clathrin Assembly Proteinsclathrin assembly protein AP180Monomeric Clathrin Assembly ProteinsPRSS35 protein, humanPRSS35 protein, mouseSerine EndopeptidasesSerine Proteases

Identifiers

PMID20511563
PMCPMC2924960
OpenAlexW2131002816

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.