Evidence map›Paper›PMID 20511549›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2010

A common polymorphism in the caspase recruitment domain of RIG-I modifies the innate immune response of human dendritic cells.

Jianzhong Hu, Estanislao Nistal-Villán, Anu Voho, Arnold Ganee, Madhu Kumar, Yaomei Ding, Adolfo García-Sastre, James G Wetmur

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 50 citations in OpenAlex.

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  12. Genetic associations with viral respiratory illnesses and asthma control in children.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Jianzhong HuDepartment of Microbiology, Mount Sinai School of Medicine, New York, NY 10029, USA.
Estanislao Nistal-Villán
Anu Voho
Arnold Ganee
Madhu Kumar
Yaomei Ding
Adolfo García-Sastre
James G Wetmur
Czech Academy of Sciences, Institute of Microbiology · CZGlobal Health Strategies (United States) · USOffice of Infectious Diseases · US

Funding

TRIM mediated host antiviral responses during influenza virus infectionsU19AI083025 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI JUNG, JAE U · 2009 to 2013
$10.0M
VIRULENCE FACTORS OF INFLUENZA VIRUS--THE NS1 PROTEINR01AI046954 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI GARCIA-SASTRE, ADOLFO · 2000 to 2010
$3.1M
Functional Analysis of NSV-based HIV vectorsP01AI082325 · NIAID · THOMAS JEFFERSON UNIVERSITY · PI SCHNELL, MATTHIAS JOHANNES · 2009 to 2010
$2.7M
NIAID NIH HHS N01 AI050021NIAID NIH HHS P01 AI082325NIAID NIH HHS P01AI082325NIAID NIH HHS R01 AI046954NIAID NIH HHS R01AI046954NIAID NIH HHS U19AI06231NIAID NIH HHS U19 AI083025NIAID NIH HHS U19AI083025
6 · The paper itself

Abstract

Infection of human dendritic cells (DCs) by negative-strand RNA viruses, such as Newcastle disease virus, leads to the induction of the IFNbeta gene, IFNB1, through the activation of the RNA helicase RIG-I, which is encoded by DDX58. Expression levels of IFNB1 and DDX58 in infected DCs showed positive correlations at the population and the single-cell levels. DDX58 has a common and potentially functional single nucleotide polymorphism, rs10813831 (A/G), encoding an Arg7Cys amino acid change in the RIG-I protein caspase recruitment domain (CARD). Quantitative RT-PCR analysis on Newcastle disease virus-infected primary DCs from 130 individuals revealed a significant association of the Arg7Cys single nucleotide polymorphism with increased IFNB1 and DDX58 transcription. Allelic imbalance analysis ruled out allele-specific DDX58 message levels and suggested that the observed association between Arg7Cys and IFNB1 and DDX58 transcription originated from a functional change in RIG-I due to the amino acid substitution in the CARD. DDX58 transfection experiments in 293T cells confirmed a biological functional difference between RIG-I 7Cys and the more common RIG-I 7Arg. Taken together, these data indicate that the innate immune response to viral infection of human cells is modified by a functional polymorphism in the RIG-I CARD.

Indexed as

AnimalsCARD Signaling Adaptor ProteinsCaspasesCell LineChickensDEAD Box Protein 58DEAD-box RNA HelicasesDendritic CellsHumansImmunity, InnateInterferon-betaNewcastle disease virusPolymorphism, Single NucleotideProtein Structure, TertiaryReceptors, ImmunologicTranscriptional ActivationCARD Signaling Adaptor ProteinsCaspasesDEAD Box Protein 58DEAD-box RNA HelicasesInterferon-betaReceptors, ImmunologicRIGI protein, human

Identifiers

PMID20511549
PMCPMC2917324
OpenAlexW1581081864

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.