Evidence map›Paper›PMID 20511499›Full record

ArticleJournal of bacteriology2010

Neisseria gonorrhoeae FA1090 carries genes encoding two classes of Vsr endonucleases.

Agnieszka Kwiatek, Maciej Luczkiewicz, Katarzyna Bandyra, Daniel C Stein, Andrzej Piekarowicz

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.2field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

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  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Agnieszka KwiatekFaculty of Biology, Institute of Microbiology, University of Warsaw, Miecznikowa 1, 02-096 Warsaw, Poland. akwiat@biol.uw.edu.pl
Maciej Luczkiewicz
Katarzyna Bandyra
Daniel C Stein
Andrzej Piekarowicz
University of Warsaw · PLUniversity of Maryland, College Park · US

Funding

LIPOOLIGOSACCHARIDE BIOSYNTHESIS IN NEISSERIACEAER01AI024452 · NIAID · UNIVERSITY OF MARYLAND COLLEGE PK CAMPUS · PI STEIN, DANIEL C · 1995 to 2004
$1.3M
Lipooligosaccharide biosynthesis in NeisseriaceaeR56AI024452 · NIAID · UNIV OF MARYLAND, COLLEGE PARK · PI STEIN, DANIEL C · 2006 to 2006
$359k
LIPOOLIGOSACCHARIDE BIOSYNTHESIS IN NEISSERIACEAER29AI024452 · NIAID · UNIVERSITY OF MARYLAND COLLEGE PK CAMPUS · PI STEIN, DANIEL C · 1988 to 1992
–
NIAID NIH HHS AI 24452NIAID NIH HHS R01 AI024452NIAID NIH HHS R56 AI024452
6 · The paper itself

Abstract

A very short patch repair system prevents mutations resulting from deamination of 5-methylcytosine to thymine. The Vsr endonuclease is the key enzyme of this system, providing sequence specificity. We identified two genes encoding Vsr endonucleases V.NgoAXIII and V.NgoAXIV from Neisseria gonorrhoeae FA1090 based on DNA sequence similarity to genes encoding Vsr endonucleases from other bacteria. After expression of the gonococcal genes in Escherichia coli, the proteins were biochemically characterized and the endonucleolytic activities and specificities of V.NgoAXIII and V.NgoAXIV were determined. V.NgoAXIII was found to be multispecific and to recognize T:G mismatches in every nucleotide context tested, whereas V.NgoAXIV recognized T:G mismatches in the following sequences: GTGG, CTGG, GTGC, ATGC, and CTGC. Alanine mutagenesis of conserved residues showed that Asp50 and His68 of V.NgoAXIII and Asp51 and His69 of V.NgoAXIV are essential for hydrolytic activity. Glu25, His64, and Asp97 of V.NgoAXIV and Glu24, Asp63, and Asp97 of V.NgoAXIII are important but not crucial for the activity of V.NgoAXIII and V.NgoAXIV. However, Glu24 and Asp63 are also important for the specificity of V.NgoAXIII. On the basis of our results concerning features of Vsr endonucleases expressed by N. gonorrhoeae FA1090, we postulate that at least two types of Vsr endonucleases can be distinguished.

Indexed as

Amino Acid SequenceBacterial ProteinsEndodeoxyribonucleasesGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicMolecular Sequence DataNeisseria gonorrhoeaePhylogenySubstrate SpecificityBacterial ProteinsEndodeoxyribonucleasesvsr endonuclease

Identifiers

PMID20511499
PMCPMC2916375
OpenAlexW2009509700

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.