Evidence map›Paper›PMID 20507981›Full record

ArticleThe Journal of biological chemistry2010

Mutation analysis of violaxanthin de-epoxidase identifies substrate-binding sites and residues involved in catalysis.

Giorgia Saga, Alejandro Giorgetti, Christian Fufezan, Giorgio M Giacometti, Roberto Bassi, Tomas Morosinotto

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 67 citations in OpenAlex.

  1. Article
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  3. Review
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  5. Article
  6. The ascorbate-glutathione cycle coming of age.Journal of experimental botany · 2024
    Review
  7. Article
  8. The Functions of Chloroplastic Ascorbate in Vascular Plants and Algae.International journal of molecular sciences · 2023
    Review
  9. Article
  10. Metabolic engineering in food crops to enhance ascorbic acid production: crop biofortification perspectives for human health.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Review
  11. Review
  12. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Giorgia SagaDipartimento di Biologia, Università di Padova, Via Ugo Bassi 58 B, 35121 Padova, Italy.
Alejandro Giorgetti
Christian Fufezan
Giorgio M Giacometti
Roberto Bassi
Tomas Morosinotto
University of Verona · ITUniversity of Padua · ITUniversity of Münster · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plants are able to deal with variable environmental conditions; when exposed to strong illumination, they safely dissipate excess energy as heat and increase their capacity for scavenging reacting oxygen species. Both these protection mechanisms involve activation of the xanthophyll cycle, in which the carotenoid violaxanthin is converted to zeaxanthin by violaxanthin de-epoxidase, using ascorbate as the source of reducing power. In this work, following determination of the three-dimensional structure of the violaxanthin de-epoxidase catalytic domain, we identified the putative binding sites for violaxanthin and ascorbate by in silico docking. Amino acid residues lying in close contact with the two substrates were analyzed for their involvement in the catalytic mechanism. Experimental results supported the proposed substrate-binding sites and point to two residues, Asp-177 and Tyr-198, which are suggested to participate in the catalytic mechanism, based on complete loss of activity in mutant proteins. The role of other residues and the mechanistic similarity to aspartic proteases and epoxide hydrolases are discussed.

Indexed as

DNA Mutational AnalysisAmino Acid SequenceAscorbic AcidAspartic AcidBinding SitesCatalysisMolecular ConformationMolecular Sequence DataMutagenesis, Site-DirectedOxidoreductasesPlantsProtein ConformationProtein Structure, TertiarySequence Homology, Amino AcidTyrosineXanthophyllsAscorbic AcidAspartic AcidOxidoreductasesTyrosineviolaxanthin de-epoxidaseXanthophyllsZeaxanthins

Identifiers

PMID20507981
PMCPMC2911307
OpenAlexW2002075858

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.