Evidence map›Paper›PMID 20507917›Full record

ArticleNucleic acids research2010

YLoc--an interpretable web server for predicting subcellular localization.

Sebastian Briesemeister, Jörg Rahnenführer, Oliver Kohlbacher

Abstract read
In one paragraph

Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 139 papers.

0numbers the graph read from it
0cells of the map it votes in
139citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

139 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Mycology · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. DNAJ protein gene expansion mechanism in Panicoideae and PgDNAJ functional identification in pearl millet.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  13. Article
  14. Article
  15. microPublication biology · 2024
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

79 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Sebastian BriesemeisterDivision for Simulation of Biological Systems, Universität Tübingen, Tübingen, Germany. briese@informatik.uni-tuebingen.de
Jörg Rahnenführer
Oliver Kohlbacher

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Predicting subcellular localization has become a valuable alternative to time-consuming experimental methods. Major drawbacks of many of these predictors is their lack of interpretability and the fact that they do not provide an estimate of the confidence of an individual prediction. We present YLoc, an interpretable web server for predicting subcellular localization. YLoc uses natural language to explain why a prediction was made and which biological property of the protein was mainly responsible for it. In addition, YLoc estimates the reliability of its own predictions. YLoc can, thus, assist in understanding protein localization and in location engineering of proteins. The YLoc web server is available online at www.multiloc.org/YLoc.

Indexed as

SoftwareAnimalsFungal ProteinsInternetOrganellesPlant ProteinsProteinsReproducibility of ResultsSequence Analysis, ProteinFungal ProteinsPlant ProteinsProteins

Identifiers

PMID20507917
PMCPMC2896088

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.