ArticleNucleic acids research2010
waviCGH: a web application for the analysis and visualization of genomic copy number alterations.
Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
11 citing papers in PubMed.
- Analysis of molecular cytogenetic alteration in rhabdomyosarcoma by array comparative genomic hybridization.PloS one · 2014Trial
- Machine learning for epigenetics and future medical applications.Epigenetics · 2017Review
- The UBC-40 Urothelial Bladder Cancer cell line index: a genomic resource for functional studies.BMC genomics · 2015Article
- From the core to beyond the margin: a genomic picture of glioblastoma intratumor heterogeneity.Oncotarget · 2015Article
- medplot: a web application for dynamic summary and analysis of longitudinal medical data based on R.PloS one · 2015Article
- Visualizing multidimensional cancer genomics data.Genome medicine · 2013Review
- O-miner: an integrative platform for automated analysis and mining of -omics data.Nucleic acids research · 2012Article
- Genovar: a detection and visualization tool for genomic variants.BMC bioinformatics · 2012Article
- FISH Oracle: a web server for flexible visualization of DNA copy number data in a genomic context.Journal of clinical bioinformatics · 2011Article
- Wavelet-based identification of DNA focal genomic aberrations from single nucleotide polymorphism arrays.BMC bioinformatics · 2011Article
- Deficient spindle assembly checkpoint in multiple myeloma.PloS one · 2011Article
Corrections and comments
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Authors and funding
5 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
waviCGH is a versatile web server for the analysis and comparison of genomic copy number alterations in multiple samples from any species. waviCGH processes data generated by high density SNP-arrays, array-CGH or copy-number calls generated by any technique. waviCGH includes methods for pre-processing of the data, segmentation, calling of gains and losses, and minimal common regions determination over a set of experiments. The server is a user-friendly interface to the analytical methods, with emphasis on results visualization in a genomic context. Analysis tools are introduced to the user as the different steps to follow in an experimental protocol. All the analysis steps generate high quality images and tables ready to be imported into spreadsheet programs. Additionally, for human, mouse and rat, altered regions are represented in a biological context by mapping them into chromosomes in an integrated cytogenetic browser. waviCGH is available at http://wavi.bioinfo.cnio.es.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.