ArticleMarine biotechnology (New York, N.Y.)2011
Development of expressed sequence tags from the pearl oyster, Pinctada martensii Dunker.
Article in Marine biotechnology (New York, N.Y.), 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed, 38 citations in OpenAlex.
- Article
- Identifying genes associated with genetic control of color polymorphism in the pearl oysterEvolutionary applications · 2023Article
- Immune-Related Functional Differential Gene Expression in Koi Carp (International journal of molecular sciences · 2018Article
- De Novo Transcriptome Analysis of Differential Functional Gene Expression in Largemouth Bass (Micropterus salmoides) after Challenge with Nocardia seriolae.International journal of molecular sciences · 2016Article
- Differential Gene Expression during Larval Metamorphic Development in the Pearl Oyster,International journal of genomics · 2016Article
- RNA-Seq in Mytilus galloprovincialis: comparative transcriptomics and expression profiles among different tissues.BMC genomics · 2015Article
- Identification of genes associated with shell color in the black-lipped pearl oyster, Pinctada margaritifera.BMC genomics · 2015Article
- Characterization of the pearl oyster (Pinctada martensii) mantle transcriptome unravels biomineralization genes.Marine biotechnology (New York, N.Y.) · 2013Article
- Identification of genes potentially related to biomineralization and immunity by transcriptome analysis of pearl sac in pearl oyster Pinctada martensii.Marine biotechnology (New York, N.Y.) · 2012Article
- Transcriptomics of in vitro immune-stimulated hemocytes from the Manila clam Ruditapes philippinarum using high-throughput sequencing.PloS one · 2012Article
- Molecular evolution of mollusc shell proteins: insights from proteomic analysis of the edible mussel Mytilus.Journal of molecular evolution · 2011Article
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Authors and funding
6 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The pearl oyster, Pinctada martensii, is the primary species used for the aquaculture production of marine pearls in China and Japan. Genetic tools and resources are needed to study the genome of this species and to understand the molecular basis of development, growth, host defense, pearl formation, and other important traits. In this study, we developed a set of expressed sequence tags (ESTs) for P. martensii. We constructed cDNA libraries from adult tissues and sequenced 7,128 ESTs. Clustering analysis identified 788 contigs (covering 5,769 ESTs) and 1,351 singletons, yielding a total of 2,139 unique genes. Of these unique genes, only 935 had significant (E-value ≤ 0.005) hits in GenBank, and the remaining 1,204 (56.3%) were novel. Most of the known genes are related to cellular structure, protein binding, and metabolic processes. Putative host-defense genes (86) were identified including C-type lectin, ferritin, polyubiquitin, proteases, protease inhibitors, scavenger receptors, heat shock proteins, and RAS oncogenes. The EST sequences developed in this study provide a valuable resource for future efforts on gene identification, marker development, and studies on molecular mechanism of host defense in pearl oysters.
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