Evidence map›Paper›PMID 20505825›Full record

ArticlePloS one2010

UBIAD1 mutation alters a mitochondrial prenyltransferase to cause Schnyder corneal dystrophy.

Michael L Nickerson, Brittany N Kostiha, Wolfgang Brandt, William Fredericks, Ke-Ping Xu, Fu-Shin Yu, Bert Gold, James Chodosh, Marc Goldberg, Da Wen Lu and 11 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 63 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Functional study of SCCD pathogenic geneMolecular medicine reports · 2021
    Article
  5. Article
  6. Article
  7. Clinical diversity in patients with Schnyder corneal dystrophy-a novel and known UBIAD1 pathogenic variants.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2018
    Article
  8. Article
  9. Article
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  11. Phenotypic spectrum of POLG1 mutations.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2018
    Article
  12. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 13 institutions in 5 countries.

Michael L NickersonCancer and Inflammation Program, National Cancer Institute, National Institutes of Health, Frederick, Maryland, USA. nickersonml@mail.nih.gov
Brittany N Kostiha
Wolfgang Brandt
William Fredericks
Ke-Ping Xu
Fu-Shin Yu
Bert Gold
James Chodosh
Marc Goldberg
Da Wen Lu
Masakazu Yamada
Timo M Tervo
Richard Grutzmacher
Chris Croasdale
Maria Hoeltzenbein
John Sutphin
S Bruce Malkowicz
Ludger Wessjohann
Howard S Kruth
Michael Dean
Jayne S Weiss
National Cancer Institute · USLeibniz Institute of Plant Biochemistry · DEUniversity of Pennsylvania · USWayne State University · USGeorge Washington University · USKresge Eye Institute · USMassachusetts Eye and Ear Infirmary · USMax Planck Institute for Molecular Genetics · DENational Heart Lung and Blood Institute · USTokyo Medical Center · JPTri-Service General Hospital · TWUniversity of Helsinki · FIUniversity of Kansas Medical Center · US

Funding

Mechanism Of Cholesterol Accumulation In Human AtherosclerosisZIAHL002832 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI KRUTH, HOWARD S · 2009 to 2019
$12.3M
MOLECULAR REGULATION OF CORNEAL WOUND HEALINGR01EY010869 · NEI · WAYNE STATE UNIVERSITY · PI YU, FU-SHIN X · 1995 to 2023
$7.7M
CANCER AND INFLAMMATION GENETICSZIABC011300 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI DEAN, MICHAEL · 2010 to 2015
$5.8M
THE GENE FOR SCHNYDER'S CRYSTALLINE CORNEAL DYSTROPHYR01EY012972 · NEI · WAYNE STATE UNIVERSITY · PI WEISS, JAYNE S · 2000 to 2002
$770k
CCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001ENEI NIH HHS EY12972NEI NIH HHS R01 EY010869NEI NIH HHS R01 EY012972
6 · The paper itself

Abstract

backgroundMutations in a novel gene, UBIAD1, were recently found to cause the autosomal dominant eye disease Schnyder corneal dystrophy (SCD). SCD is characterized by an abnormal deposition of cholesterol and phospholipids in the cornea resulting in progressive corneal opacification and visual loss. We characterized lesions in the UBIAD1 gene in new SCD families and examined protein homology, localization, and structure. METHODOLOGY/PRINCIPAL

findingsWe characterized five novel mutations in the UBIAD1 gene in ten SCD families, including a first SCD family of Native American ethnicity. Examination of protein homology revealed that SCD altered amino acids which were highly conserved across species. Cell lines were established from patients including keratocytes obtained after corneal transplant surgery and lymphoblastoid cell lines from Epstein-Barr virus immortalized peripheral blood mononuclear cells. These were used to determine the subcellular localization of mutant and wild type protein, and to examine cholesterol metabolite ratios. Immunohistochemistry using antibodies specific for UBIAD1 protein in keratocytes revealed that both wild type and N102S protein were localized sub-cellularly to mitochondria. Analysis of cholesterol metabolites in patient cell line extracts showed no significant alteration in the presence of mutant protein indicating a potentially novel function of the UBIAD1 protein in cholesterol biochemistry. Molecular modeling was used to develop a model of human UBIAD1 protein in a membrane and revealed potentially critical roles for amino acids mutated in SCD. Potential primary and secondary substrate binding sites were identified and docking simulations indicated likely substrates including prenyl and phenolic molecules. CONCLUSIONS/SIGNIFICANCE: Accumulating evidence from the SCD familial mutation spectrum, protein homology across species, and molecular modeling suggest that protein function is likely down-regulated by SCD mutations. Mitochondrial UBIAD1 protein appears to have a highly conserved function that, at least in humans, is involved in cholesterol metabolism in a novel manner.

Indexed as

Amino AcidsAmino Acid SequenceBase SequenceCholesterolConserved SequenceCorneaCorneal Dystrophies, HereditaryDemographyDimethylallyltranstransferaseDNA Mutational AnalysisFamilyHumansLinear ModelsMitochondriaModels, MolecularMolecular Sequence DataAmino AcidsCholesterolDimethylallyltranstransferaseMutant ProteinsProteinsUBIAD1 protein, human

Identifiers

PMID20505825
PMCPMC2874009
OpenAlexW2145604196

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.