Evidence map›Paper›PMID 20504773›Full record

ArticleThe Journal of biological chemistry2010

A disease-causing mutation in the active site of serine palmitoyltransferase causes catalytic promiscuity.

Kenneth Gable, Sita D Gupta, Gongshe Han, Somashekarappa Niranjanakumari, Jeffrey M Harmon, Teresa M Dunn

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 101 citations in OpenAlex.

  1. Trial
  2. ORMDL Proteins Turnover via Proteasome and Autophagy Is Cell-Type Dependent and Tied to Ceramide Homeostasis.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
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  5. Human genetic defects of sphingolipid synthesis.Journal of inherited metabolic disease · 2025
    Review
  6. Regulation of cellular and systemic sphingolipid homeostasis.Nature reviews. Molecular cell biology · 2024
    Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. Sphingolipids in neurodegenerative diseases.Frontiers in neuroscience · 2023
    Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Kenneth GableDepartment of Biochemistry, Uniformed Services University of the Health Sciences, Bethesda, Maryland 20184-4799, USA.
Sita D Gupta
Gongshe Han
Somashekarappa Niranjanakumari
Jeffrey M Harmon
Teresa M Dunn
Uniformed Services University of the Health Sciences · US

Funding

Serine Palmitoyl Transferase and Hereditary NeuropathyR01NS047717 · NINDS · HENRY M. JACKSON FDN FOR THE ADV MIL/MED · PI DUNN, TERESA M · 2004 to 2008
$2.1M
NINDS NIH HHS NS47717NINDS NIH HHS R01 NS047717
6 · The paper itself

Abstract

The autosomal dominant peripheral sensory neuropathy HSAN1 results from mutations in the LCB1 subunit of serine palmitoyltransferase (SPT). Serum from patients and transgenic mice expressing a disease-causing mutation (C133W) contain elevated levels of 1-deoxysphinganine (1-deoxySa), which presumably arise from inappropriate condensation of alanine with palmitoyl-CoA. Mutant heterodimeric SPT is catalytically inactive. However, mutant heterotrimeric SPT has approximately 10-20% of wild-type activity and supports growth of yeast cells lacking endogenous SPT. In addition, long chain base profiling revealed the synthesis of significantly more 1-deoxySa in yeast and mammalian cells expressing the heterotrimeric mutant enzyme than in cells expressing wild-type enzyme. Wild-type and mutant enzymes had similar affinities for serine. Surprisingly, the enzymes also had similar affinities for alanine, indicating that the major affect of the C133W mutation is to enhance activation of alanine for condensation with the acyl-CoA substrate. In vivo synthesis of 1-deoxySa by the mutant enzyme was proportional to the ratio of alanine to serine in the growth media, suggesting that this ratio can be used to modulate the relative synthesis of sphinganine and 1-deoxySa. By expressing SPT as a single-chain fusion protein to ensure stoichiometric expression of all three subunits, we showed that GADD153, a marker for endoplasmic reticulum stress, was significantly elevated in cells expressing mutant heterotrimers. GADD153 was also elevated in cells treated with 1-deoxySa. Taken together, these data indicate that the HSAN1 mutations perturb the active site of SPT resulting in a gain of function that is responsible for the HSAN1 phenotype.

Indexed as

BiocatalysisMutationAlanineAnimalsCatalytic DomainCHO CellsCricetinaeCricetulusExtracellular SpaceHereditary Sensory and Autonomic NeuropathiesHumansIsoenzymesKineticsMiceProtein MultimerizationProtein Structure, Quaternary1-deoxysphingosineAlanineIsoenzymesSerineSerine C-PalmitoyltransferaseSphingosine

Identifiers

PMID20504773
PMCPMC2906276
OpenAlexW2028768124

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.