Evidence map›Paper›PMID 20502632›Full record

ArticlePLoS pathogens2010

Combining ChIP-chip and expression profiling to model the MoCRZ1 mediated circuit for Ca/calcineurin signaling in the rice blast fungus.

Soonok Kim, Jinnan Hu, Yeonyee Oh, Jongsun Park, Jinhee Choi, Yong-Hwan Lee, Ralph A Dean, Thomas K Mitchell

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
5.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 75 citations in OpenAlex.

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  5. Hyphopodium-Specific Signaling Is Required for Plant Infection byJournal of fungi (Basel, Switzerland) · 2023
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  6. Frontiers in microbiology · 2023
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  7. Action Mechanisms of Effectors in Plant-Pathogen Interaction.International journal of molecular sciences · 2022
    Review
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  13. Review
  14. Article
  15. Article
  16. Article
  17. Phospholipase C FromFrontiers in microbiology · 2020
    Article
  18. International journal of molecular sciences · 2019
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Soonok KimDepartment of Plant Pathology, The Ohio State University, Columbus, Ohio, USA.
Jinnan Hu
Yeonyee Oh
Jongsun Park
Jinhee Choi
Yong-Hwan Lee
Ralph A Dean
Thomas K Mitchell
Seoul National University · KRThe Ohio State University · USNorth Carolina State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Significant progress has been made in defining the central signaling networks in many organisms, but collectively we know little about the downstream targets of these networks and the genes they regulate. To reconstruct the regulatory circuit of calcineurin signal transduction via MoCRZ1, a Magnaporthe oryzae C2H2 transcription factor activated by calcineurin dephosphorylation, we used a combined approach of chromatin immunoprecipitation - chip (ChIP-chip), coupled with microarray expression studies. One hundred forty genes were identified as being both a direct target of MoCRZ1 and having expression concurrently differentially regulated in a calcium/calcineurin/MoCRZ1 dependent manner. Highly represented were genes involved in calcium signaling, small molecule transport, ion homeostasis, cell wall synthesis/maintenance, and fungal virulence. Of particular note, genes involved in vesicle mediated secretion necessary for establishing host associations, were also found. MoCRZ1 itself was a target, suggesting a previously unreported autoregulation control point. The data also implicated a previously unreported feedback regulation mechanism of calcineurin activity. We propose that calcium/calcineurin regulated signal transduction circuits controlling development and pathogenicity manifest through multiple layers of regulation. We present results from the ChIP-chip and expression analysis along with a refined model of calcium/calcineurin signaling in this important plant pathogen.

Indexed as

Gene Expression ProfilingCalcineurinCalciumFungal ProteinsGenome, FungalGreen Fluorescent ProteinsMagnaportheOligonucleotide Array Sequence AnalysisOryzaPlant DiseasesSignal TransductionTranscription FactorsCalcineurinCalciumFungal ProteinsGreen Fluorescent ProteinsTranscription Factors

Identifiers

PMID20502632
PMCPMC2873923
OpenAlexW1992811574

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.