ArticleJournal of applied crystallography2010
Autoindexing with outlier rejection and identification of superimposed lattices.
Article in Journal of applied crystallography, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed.
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- MXCuBE2: the dawn of MXCuBE Collaboration.Journal of synchrotron radiation · 2019Article
- Challenge data set for macromolecular multi-microcrystallography.Acta crystallographica. Section D, Structural biology · 2019Article
- Improving signal strength in serial crystallography with DIALS geometry refinement.Acta crystallographica. Section D, Structural biology · 2018Article
- Protein crystallization and initial neutron diffraction studies of the photosystem II subunit PsbO.Acta crystallographica. Section F, Structural biology communications · 2017Article
- FELIX: an algorithm for indexing multiple crystallites in X-ray free-electron laser snapshot diffraction images.Journal of applied crystallography · 2017Article
- Assessment of microcrystal quality by transmission electron microscopy for efficient serial femtosecond crystallography.Archives of biochemistry and biophysics · 2016Review
- Acoustic Injectors for Drop-On-Demand Serial Femtosecond Crystallography.Structure (London, England : 1993) · 2016Article
- Diffraction-geometry refinement in the DIALS framework.Acta crystallographica. Section D, Structural biology · 2016Article
- New methods for indexing multi-lattice diffraction data.Acta crystallographica. Section D, Biological crystallography · 2014Article
- Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers.Nature methods · 2014Article
- Exploiting fast detectors to enter a new dimension in room-temperature crystallography.Acta crystallographica. Section D, Biological crystallography · 2014Article
- New Python-based methods for data processing.Acta crystallographica. Section D, Biological crystallography · 2013Article
- Autoindexing diffraction images with iMosflm.Acta crystallographica. Section D, Biological crystallography · 2013Article
- Outrunning free radicals in room-temperature macromolecular crystallography.Acta crystallographica. Section D, Biological crystallography · 2012Article
- X-ray-excited optical luminescence of protein crystals: a new tool for studying radiation damage during diffraction data collection.Acta crystallographica. Section D, Biological crystallography · 2012Article
- Crystal structure of perakine reductase, founding member of a novel aldo-keto reductase (AKR) subfamily that undergoes unique conformational changes during NADPH binding.The Journal of biological chemistry · 2012Article
- Article
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2 authors.
Funding
Abstract
Constructing a model lattice to fit the observed Bragg diffraction pattern is straightforward for perfect samples, but indexing can be challenging when artifacts are present, such as poorly shaped spots, split crystals giving multiple closely aligned lattices and outright superposition of patterns from aggregated microcrystals. To optimize the lattice model against marginal data, refinement can be performed using a subset of the observations from which the poorly fitting spots have been discarded. Outliers are identified by assuming a Gaussian error distribution for the best-fitting spots and points diverging from this distribution are culled. The set of remaining observations produces a superior lattice model, while the rejected observations can be used to identify a second crystal lattice, if one is present. The prevalence of outliers provides a potentially useful measure of sample quality. The described procedures are implemented for macromolecular crystallography within the autoindexing program labelit.index (http://cci.lbl.gov/labelit).
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Registered trials
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