ArticleNucleic acids research2010
DIALIGN-TX and multiple protein alignment using secondary structure information at GOBICS.
Article in Nucleic acids research, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.
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Who cites it
4 citing papers in PubMed.
- MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts.BMC bioinformatics · 2011Article
- Base-By-Base version 2: single nucleotide-level analysis of whole viral genome alignments.Microbial informatics and experimentation · 2011Article
- PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions.Nucleic acids research · 2011Article
- Automatic detection of anchor points for multiple sequence alignment.BMC bioinformatics · 2010Article
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Authors and funding
6 authors.
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Abstract
We introduce web interfaces for two recent extensions of the multiple-alignment program DIALIGN. DIALIGN-TX combines the greedy heuristic previously used in DIALIGN with a more traditional 'progressive' approach for improved performance on locally and globally related sequence sets. In addition, we offer a version of DIALIGN that uses predicted protein secondary structures together with primary sequence information to construct multiple protein alignments. Both programs are available through 'Göttingen Bioinformatics Compute Server' (GOBICS).
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