Evidence map›Paper›PMID 20497332›Full record

ArticleMolecular microbiology2010

The sigma(E) stress response is required for stress-induced mutation and amplification in Escherichia coli.

Janet L Gibson, Mary-Jane Lombardo, Philip C Thornton, Kenneth H Hu, Rodrigo S Galhardo, Bernadette Beadle, Anand Habib, Daniel B Magner, Laura S Frost, Christophe Herman and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular microbiology, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
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  4. Article
  5. Mutagenic Characteristics of Six Heavy Metals inEnvironmental science & technology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 3 countries.

Janet L GibsonDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030-3411, USA.
Mary-Jane Lombardo
Philip C Thornton
Kenneth H Hu
Rodrigo S Galhardo
Bernadette Beadle
Anand Habib
Daniel B Magner
Laura S Frost
Christophe Herman
P J Hastings
Susan M Rosenberg
University of Alberta · CABaylor College of Medicine · USJ. Craig Venter Institute · USMassachusetts Institute of Technology · USStanford University · USUniversidade de São Paulo · BR

Funding

MOLECULAR MECHANISMS /STRESS-INDUCED MUTATION /E. COLIR01GM053158 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI ROSENBERG, SUSAN M · 1997 to 2014
$7.4M
Mechanisms of Adaptive AmplificationR01GM064022 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI HASTINGS, PHILIP JOHN · 2001 to 2010
$2.3M
CONTROL OF HYPERMUTATION IN STATIONARY-PHASE E COLIF32GM019909 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI LOMBARDO, MARY J · 1999 to 2000
$43k
CIHR MT11249NIGMS NIH HHS F32 GM019909NIGMS NIH HHS F32-GM19909NIGMS NIH HHS R01 GM053158NIGMS NIH HHS R01 GM064022NIGMS NIH HHS R01-GM53158NIGMS NIH HHS R01-GM64022
6 · The paper itself

Abstract

Pathways of mutagenesis are induced in microbes under adverse conditions controlled by stress responses. Control of mutagenesis by stress responses may accelerate evolution specifically when cells are maladapted to their environments, i.e. are stressed. Stress-induced mutagenesis in the Escherichia coli Lac assay occurs either by 'point' mutation or gene amplification. Point mutagenesis is associated with DNA double-strand-break (DSB) repair and requires DinB error-prone DNA polymerase and the SOS DNA-damage- and RpoS general-stress responses. We report that the RpoE envelope-protein-stress response is also required. In a screen for mutagenesis-defective mutants, we isolated a transposon insertion in the rpoE P2 promoter. The insertion prevents rpoE induction during stress, but leaves constitutive expression intact, and allows cell viability. rpoE insertion and suppressed null mutants display reduced point mutagenesis and maintenance of amplified DNA. Furthermore, sigma(E) acts independently of stress responses previously implicated: SOS/DinB and RpoS, and of sigma(32), which was postulated to affect mutagenesis. I-SceI-induced DSBs alleviated much of the rpoE phenotype, implying that sigma(E) promoted DSB formation. Thus, a third stress response and stress input regulate DSB-repair-associated stress-induced mutagenesis. This provides the first report of mutagenesis promoted by sigma(E), and implies that extracytoplasmic stressors may affect genome integrity and, potentially, the ability to evolve.

Indexed as

SOS Response, GeneticsDNA, BacterialDNA Breaks, Double-StrandedDNA RepairDNA Transposable ElementsEscherichia coliEscherichia coli ProteinsMutagenesis, InsertionalPoint MutationPromoter Regions, GeneticSigma FactorStress, PhysiologicalDNA, BacterialDNA Transposable ElementsEscherichia coli ProteinsSigma Factorsporulation-specific sigma factors

Identifiers

PMID20497332
PMCPMC2909356
OpenAlexW2098217300

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.